View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_30 (Length: 232)
Name: NF13588_low_30
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 25901333 - 25901531
Alignment:
| Q |
18 |
ttaatattactccctcagctcctttttaactgtcaaataaaagttatttacatacacattgaactttaaaaatggcagagaaatgaaaacacatttttac |
117 |
Q |
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| T |
25901333 |
ttaatattactctctcggctcctttttaaccgtcaaataaaagttatttacatacacattgaactttaaaaatggcaaagaaatgaaaacacatttttac |
25901432 |
T |
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| Q |
118 |
tacaattgcgacaattaaaatgtaaccgagggagtagtaagtaatgtacctctgagcaagaagcctgcattgtgaaatcattgaaacagctaacaacat |
216 |
Q |
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| T |
25901433 |
tacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacat |
25901531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 52002406 - 52002552
Alignment:
| Q |
73 |
acattgaactttaaaaatggcagagaaatgaaaacacatttttactacaattgcgacaattaaaatgtaaccgagggagtagtaag----taatgtacct |
168 |
Q |
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||||||||||||||||| | | ||||||||||||||||||||||||||| |||||| |||||| ||||| ||| | ||||||| |||||||||| |
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| T |
52002406 |
acattgaactttaaaaacgacgaagaaatgaaaacacatttttactacaactgcgacgtttaaaaagtaactaaggaattagtaagtaactaatgtacct |
52002505 |
T |
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| Q |
169 |
ctgagcaagaagcctgcattgtgaaatcattgaaacagctaacaaca |
215 |
Q |
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| T |
52002506 |
ctgagcaagaagcctgcattgtgaaatcattgaaacagctaataaca |
52002552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 52002258 - 52002311
Alignment:
| Q |
18 |
ttaatattactccctcagctcctttttaactgtcaaataaaagttatttacata |
71 |
Q |
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||||||||||| |||| ||||||||||||| ||||||| |||||| |||||||| |
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| T |
52002258 |
ttaatattacttcctcggctcctttttaacagtcaaattaaagttgtttacata |
52002311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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