View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_32 (Length: 229)
Name: NF13588_low_32
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_32 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 1727174 - 1727051
Alignment:
| Q |
89 |
aaaaaagagttcaaccatgatgctattaattaattctaaaaatacaatcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatca |
188 |
Q |
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| T |
1727174 |
aaaaaagagtttaaccatgatgctattaattaattctaaaaatacaatcaaattctgttggattaacgtgtccagtttgcaaggcaaatatctatgatca |
1727075 |
T |
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| Q |
189 |
aatcaatgtgttggagagtggatc |
212 |
Q |
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| T |
1727074 |
aatcaatgtgttggagagtggatc |
1727051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 1739098 - 1739014
Alignment:
| Q |
128 |
aaatacaatcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatcaaatcaatgtgttggagagtggatc |
212 |
Q |
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| T |
1739098 |
aaatacaatcagattctgttggattcatgtgtccagtttgcaaggcaaaaatctctggtcaaatcaatgtgttggacagtggatc |
1739014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 44371536 - 44371617
Alignment:
| Q |
130 |
atacaatcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatcaaatcaatgtgttggagagtggatc |
212 |
Q |
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| T |
44371536 |
atacaataaaattctgttggattcatgtgtccaatttgcaaagc-aaaatctttggtcaaatcaatgtgttggacaatggatc |
44371617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 1739193 - 1739150
Alignment:
| Q |
39 |
acaagaagttatgttaaatatggattacaattatcagctcacaa |
82 |
Q |
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| T |
1739193 |
acaagaagttatgttaaatatggattacaaaaatcagctcacaa |
1739150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 1727201 - 1727172
Alignment:
| Q |
27 |
gtctgcatcacaacaagaagttatgttaaa |
56 |
Q |
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| T |
1727201 |
gtctgcatcacaacaagaagttatgttaaa |
1727172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 3316 - 3235
Alignment:
| Q |
130 |
atacaatcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatcaaatcaatgtgttggagagtggatc |
212 |
Q |
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| T |
3316 |
atacaataaaattctgttggattcatgtgtccaatttgcaaagc-aaaatctttggtcaaatcaatgtgttggacaatggatc |
3235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 3316 - 3235
Alignment:
| Q |
130 |
atacaatcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatcaaatcaatgtgttggagagtggatc |
212 |
Q |
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||||||| ||||||||||||||| | ||||||| |||||||||| ||||||| || |||||||||||||||||| | |||||| |
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| T |
3316 |
atacaataaaattctgttggattcatgtgtccaatttgcaaagc-aaaatctttggtcaaatcaatgtgttggacaatggatc |
3235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 25088853 - 25088788
Alignment:
| Q |
136 |
tcaaattctgttggattaacgtgtccagtttgcaaagcaaaaatctatgatcaaatcaatgtgttg |
201 |
Q |
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| T |
25088853 |
tcaagttctgctggattcatgtgtccaatttgcaaagcaaaaatatctggtcaaagcaatgtgttg |
25088788 |
T |
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