View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_33 (Length: 226)
Name: NF13588_low_33
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 39730545 - 39730766
Alignment:
| Q |
4 |
aaaacacgtatagggtaattttgcttaaaattttaaaatgacaaaatctatttgagcagaagtggcggcgaacggcagagatgcagacgctgatccaaaa |
103 |
Q |
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| T |
39730545 |
aaaacacgtatagggtaattttgcttaaaattttaaaatgacaaaatctatttgagcagaagtggcggtgaacggcagagatgcagacgctgatccaaaa |
39730644 |
T |
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| Q |
104 |
ttcaaaccaaaaagcgcaatggcagtattgtaattacaaccacatctgattaaattagaaattaaaataaatggagtaatttaaagnnnnnnnnataaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39730645 |
ttcaaaccaaaaagcgcaatggcagtattgtaattacaaccacatctgattaaattagaaattaaaataaatggagtaatttaaag-tttttttataaag |
39730743 |
T |
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| Q |
204 |
tttaaaatttaaacggttctcct |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
39730744 |
tttaaaatttaaacggttctcct |
39730766 |
T |
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