View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13588_low_5 (Length: 693)
Name: NF13588_low_5
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 24 - 675
Target Start/End: Original strand, 11901807 - 11902458
Alignment:
| Q |
24 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901807 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
11901906 |
T |
|
| Q |
124 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
223 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11901907 |
cgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgtt |
11902006 |
T |
|
| Q |
224 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902007 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
11902106 |
T |
|
| Q |
324 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11902107 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgttatgaga |
11902206 |
T |
|
| Q |
424 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11902207 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggtg |
11902306 |
T |
|
| Q |
524 |
ttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttg |
623 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902307 |
ttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttg |
11902406 |
T |
|
| Q |
624 |
ctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatc |
675 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902407 |
ctttatcgaacaacaagtctgggatcccacatgacagatccaaagcaaaatc |
11902458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 675
Target Start/End: Complemental strand, 11860747 - 11860096
Alignment:
| Q |
24 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
123 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
11860747 |
gatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgacttgttcaagatg |
11860648 |
T |
|
| Q |
124 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
223 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||||||| |
|
|
| T |
11860647 |
agaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaatgtt |
11860551 |
T |
|
| Q |
224 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
323 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||| ||||| |
|
|
| T |
11860550 |
tgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatgtctt |
11860451 |
T |
|
| Q |
324 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
423 |
Q |
| |
|
|||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
11860450 |
ttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttatggga |
11860351 |
T |
|
| Q |
424 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaag |
520 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||||||| ||||||||||||| ||| || || | |||||||| |
|
|
| T |
11860350 |
aagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaag |
11860251 |
T |
|
| Q |
521 |
gtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttct |
620 |
Q |
| |
|
|||| |||||||||||| || ||||||| ||||| ||| ||||||| |||||||||||||||||| || |||| |||||||||| ||| || ||||||| |
|
|
| T |
11860250 |
gtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttct |
11860151 |
T |
|
| Q |
621 |
ttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatc |
675 |
Q |
| |
|
||||||| | |||| | | || |||||| ||||||| ||||| ||||||||||| |
|
|
| T |
11860150 |
ttgctttctgaaacaccaaatcagggatctcacatgaaagatctaaagcaaaatc |
11860096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 24 - 674
Target Start/End: Complemental strand, 11828612 - 11827962
Alignment:
| Q |
24 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||| ||| |||||| ||||| |
|
|
| T |
11828612 |
gatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatttgttccagatg |
11828513 |
T |
|
| Q |
124 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
223 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||||||| |
|
|
| T |
11828512 |
cataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaatgtt |
11828416 |
T |
|
| Q |
224 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
323 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| || | |||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
11828415 |
tgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatccatgtctt |
11828316 |
T |
|
| Q |
324 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
423 |
Q |
| |
|
|||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || ||||||||||| || |
|
|
| T |
11828315 |
ttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgttatgtga |
11828216 |
T |
|
| Q |
424 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggacttgaag |
520 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| ||| || || | |||||||| |
|
|
| T |
11828215 |
aagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaag |
11828116 |
T |
|
| Q |
521 |
gtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttct |
620 |
Q |
| |
|
|||| |||||||||||| || ||||| | ||||||||| |||||||| ||||| |||||||||||| || |||| |||||||||||||| || ||||||| |
|
|
| T |
11828115 |
gtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttct |
11828016 |
T |
|
| Q |
621 |
ttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaat |
674 |
Q |
| |
|
||||| | | |||| ||| || |||||| ||||||| ||||| |||||||||| |
|
|
| T |
11828015 |
ttgctgtctgaaacaccgaatcagggatctcacatgaaagatctaaagcaaaat |
11827962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 24 - 675
Target Start/End: Complemental strand, 12039512 - 12038864
Alignment:
| Q |
24 |
gatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatg |
123 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || ||| ||||||| ||||||||||| |||| |||||| ||| | |||||| |||||||||| ||||| |
|
|
| T |
12039512 |
gatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgacttgttccagatg |
12039413 |
T |
|
| Q |
124 |
cgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtt |
223 |
Q |
| |
|
||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| || | | | ||||||||| || |||||||||| ||||||| |
|
|
| T |
12039412 |
cgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaa---cgtatttcttgctagctacaaagagtgacaatgtt |
12039316 |
T |
|
| Q |
224 |
tgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctt |
323 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
12039315 |
tgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatgtctt |
12039216 |
T |
|
| Q |
324 |
ttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatggga |
423 |
Q |
| |
|
|||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||| || |
|
|
| T |
12039215 |
ttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttgttatgaga |
12039116 |
T |
|
| Q |
424 |
aagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||| | |||| |||||||||||||| | ||| | ||| |||| | ||||||||| |
|
|
| T |
12039115 |
aagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggtg |
12039016 |
T |
|
| Q |
524 |
ttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttg |
623 |
Q |
| |
|
|| ||||||||||| || ||||||| |||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||| || | |
|
|
| T |
12039015 |
ttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttag |
12038916 |
T |
|
| Q |
624 |
ctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatc |
675 |
Q |
| |
|
|||| || |||| | |||||||||||||| ||| ||| |||||| |||| |
|
|
| T |
12038915 |
ctttctcaaacacacaatctgggatcccacacaacaaatctaaagcataatc |
12038864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 675
Target Start/End: Complemental strand, 11732393 - 11731744
Alignment:
| Q |
26 |
tcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagatgcg |
125 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||| || |||||||||||| ||||||| || |||||| |
|
|
| T |
11732393 |
tcccatcttagagtcaaatgctgaatgtgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgca |
11732294 |
T |
|
| Q |
126 |
atatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtttg |
225 |
Q |
| |
|
| ||||| | | | | | || ||||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||| || |||| ||||||||| |
|
|
| T |
11732293 |
aaatttccagtttgtccttgaggttgttgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttg |
11732194 |
T |
|
| Q |
226 |
taaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtctttt |
325 |
Q |
| |
|
||| |||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||| ||||||| |||||| | |||| | | |||||||||| |
|
|
| T |
11732193 |
taaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtctttt |
11732094 |
T |
|
| Q |
326 |
ggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatgggaaa |
425 |
Q |
| |
|
|||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||||| | |
|
|
| T |
11732093 |
ggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtgggata |
11731994 |
T |
|
| Q |
426 |
gatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaaggtgtt |
525 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||| ||||| || ||||| |||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
11731993 |
gatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgtt |
11731894 |
T |
|
| Q |
526 |
gaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtg---ctgtacggcaaaagaatggttctcagtttcttt |
622 |
Q |
| |
|
|||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| || |||| ||||| | |||||| |||||||||||| |
|
|
| T |
11731893 |
gaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttcttt |
11731794 |
T |
|
| Q |
623 |
gctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatc |
675 |
Q |
| |
|
||| || |||| ||| ||||| |||||||| || ||||||||| ||||||| |
|
|
| T |
11731793 |
gctata---aacatcgaatctggaatcccacacgaaagatccaaaccaaaatc |
11731744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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