View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13588_low_6 (Length: 581)
Name: NF13588_low_6
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_6 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0272 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 2338 - 2910
Alignment:
| Q |
1 |
catctgtttattcacttgtcttttgcttcagaagtgtggcaaggtttgttcggctggcaggatttcagctttgtgttacctccgaatttgttcattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338 |
catctgtttattcacttgtcttttgcttcagaagtgtggcaaggtttgttcggctggcaggatttcagctttgtgttacctccgaatttgttcattcatt |
2437 |
T |
|
| Q |
101 |
gggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatga |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2438 |
gggagtgttggagtgggggtgaatcaaagaagaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatga |
2537 |
T |
|
| Q |
201 |
tcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2538 |
tcgcatctttacaaatacaatttgtggggtagtggaggtggtagaggcgattaaggttttatcgtggagatgggtgttgagtcgaatgaatatgtcggcg |
2637 |
T |
|
| Q |
301 |
agtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2638 |
agtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgt |
2737 |
T |
|
| Q |
401 |
gcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2738 |
gcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggtttttctgcctacaagctt |
2837 |
T |
|
| Q |
501 |
gatgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctatgct |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2838 |
gatgtcatgcgctgtgggagtttttgttgtagttttgtgaggtttctggtaaattttgtattgtccctgtgct |
2910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 132 - 525
Target Start/End: Original strand, 5037956 - 5038356
Alignment:
| Q |
132 |
gaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||| ||| || |||| |||||| ||||||||||| |
|
|
| T |
5037956 |
gaagattcgtaaaggttactggttgatttggcatgccaaggtttggaatatttggaggctgagaacccgtcgtatttttaataatacagtttgtggggtg |
5038055 |
T |
|
| Q |
232 |
gtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaacccta |
331 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| || || ||||||||||||||||| |||| || |||| ||||| |
|
|
| T |
5038056 |
gcggagacggtggaggcgattaaggttttatcgtggagatgggtgttgagtcgtatgcatgtgccggcgagtttgtattacaaatggtgctggagcccta |
5038155 |
T |
|
| Q |
332 |
gggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtgtactgcagtttgg |
431 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| | |
|
|
| T |
5038156 |
gggagtgtctgattcgttaagggagccatttcggaagatcggaggttgaggctggggtatgcggtgtgtgcagtgtgcggtttggtgtactgcagttttg |
5038255 |
T |
|
| Q |
432 |
tatatgttagcctcaggtctgctgttctgttagcagtggc------agttttctggttttt-ctgcctacaagcttgatgtcatgcgctgtgggagtttt |
524 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||| |||| |||||||||||||||||| ||| |
|
|
| T |
5038256 |
tatatgttagcctcaagtctgctgttctgttagcagtggctgttttcgttttctggtttttgcttcctacaggctttctgtcatgcgctgtgggagcttt |
5038355 |
T |
|
| Q |
525 |
t |
525 |
Q |
| |
|
| |
|
|
| T |
5038356 |
t |
5038356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 1611575 - 1611722
Alignment:
| Q |
174 |
ttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatga |
273 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| || |||| | |||||||||||||||||||| | |||||| || |
|
|
| T |
1611575 |
ttggagtatttggagggtgaggaatgatcgcatttttaataatgtaatttgtggggcggcggagttagtggaggcgattaaggttttgttgtggaggtgc |
1611674 |
T |
|
| Q |
274 |
gtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgtt |
322 |
Q |
| |
|
|||||||||| |||| || |||||||||||| ||||||||| |||| |
|
|
| T |
1611675 |
atgttgagtcgtttgaacgtgccggcgagtttgt-ttacgaatggtgtt |
1611722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 13725842 - 13725912
Alignment:
| Q |
133 |
aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg |
203 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
13725842 |
aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcg |
13725912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 26728809 - 26728892
Alignment:
| Q |
154 |
ttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtggag |
237 |
Q |
| |
|
||||||||||| |||| ||| |||||||| ||||||| ||||||||| || || |||| ||| ||| ||||||||||| |||| |
|
|
| T |
26728809 |
ttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtggggtggaggag |
26728892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 267 - 551
Target Start/End: Complemental strand, 47644688 - 47644394
Alignment:
| Q |
267 |
gagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttcagggtgtggtttcgga |
366 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
47644688 |
gagatgggtgttgagtcgaatgaatgtgtcggcgggtttgtattacgaatggtgttggagccctagggagtgtctgattcgttaagggagaggtttcgga |
47644589 |
T |
|
| Q |
367 |
agatcggaggttgaggctggggtatgcggtgcgtgcagtttgcgttttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagca |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47644588 |
agatcggaggttgaggctggggtatgcggtgcatgcagtttcagatttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagca |
47644489 |
T |
|
| Q |
467 |
gtggcag--------ttttctggttttt-ctgcctacaagcttgatgtcatgcgctgtgggag--tttttgttgtagttttgtgaggtttctggta |
551 |
Q |
| |
|
||||||| ||||||||||||| || |||||| ||||| |||||||||||| ||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
47644488 |
gtggcagtttttttgttttctggtttttgcttcctacacgcttgctgtcatgcgctgagggagcttttttgttgctg-tttgtgaggtttctggta |
47644394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 48721701 - 48721750
Alignment:
| Q |
152 |
ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgat |
201 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
48721701 |
ggttaatttggcatgcggcggtttggagtatttggagggcaagaaatgat |
48721750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 412 - 551
Target Start/End: Complemental strand, 34514961 - 34514821
Alignment:
| Q |
412 |
tttggtgtactgcagtttggtatatgttagcctcaggtctgctgttctgttagcagtggcagttttctggttttt-ctgcctacaagcttgatgtcatgc |
510 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |||| |||||||| |
|
|
| T |
34514961 |
tttggtgtactgcagttttgtatatgttagcctcaggtctgctgttctgttagcagtttttgttttctggtttttgcttcttacaggctttctgtcatgc |
34514862 |
T |
|
| Q |
511 |
gctgtgggag-tttttgttgtagttttgtgaggtttctggta |
551 |
Q |
| |
|
| |||||||| ||||||||| | |||||| ||||||||||| |
|
|
| T |
34514861 |
gttgtgggagctttttgttgctg-tttgtggggtttctggta |
34514821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 95 - 284
Target Start/End: Complemental strand, 34800287 - 34800098
Alignment:
| Q |
95 |
ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag |
194 |
Q |
| |
|
|||| |||||||| |||||||||| | ||||| | |||| |||||||||| || |||||||||||| |||||||| |||||||||||||||||| | |
|
|
| T |
34800287 |
ttcactgggagtgatggaatggggcagtgtcaaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagtatttggagggtgcg |
34800188 |
T |
|
| Q |
195 |
aaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatgagtgttgagtcg |
284 |
Q |
| |
|
||||||||| ||||||| ||| | |||||| | | |||| | |||||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
34800187 |
aaatgatcgtatctttaataatgttacttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcg |
34800098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 397
Target Start/End: Original strand, 11888908 - 11889144
Alignment:
| Q |
152 |
ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgat |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||| ||| |||||||||| | | ||||||||||| |
|
|
| T |
11888908 |
ggttgatttggcatcccgcggtttggagtatttggagggcgagaaatgat-gcatttttaacaatttaatttgtggg--------gatagtggaggcgat |
11888998 |
T |
|
| Q |
252 |
taaggttttatcgtggagatgagtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgatgttggaaccctagggagtgtctgattcgttca |
351 |
Q |
| |
|
||||||||| |||||||| || |||||||||| |||| | | |||||||||| ||| |||| |||||| || || |||||||| || | || | |
|
|
| T |
11888999 |
taaggttttgtcgtggaggtggatgttgagtcgtttgaaggtaccagcgagtttgttttatgaatagtgttggtgcctaagagagtgtctcatgctttaa |
11889098 |
T |
|
| Q |
352 |
gggtgtggtttcggaagatcggaggttgaggctggggtatgcggtg |
397 |
Q |
| |
|
|| | ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
11889099 |
tggggctgtttcggtatcgcggaggttgaggctggggtatgcggtg |
11889144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 26156703 - 26156736
Alignment:
| Q |
80 |
ctccgaatttgttcattcattgggagtgttggaa |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
26156703 |
ctccgaatttgtttattcattgggagtgttggaa |
26156736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 10909587 - 10909517
Alignment:
| Q |
133 |
aagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg |
203 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
10909587 |
aagattcgtagaggttttcggttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcg |
10909517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 95 - 272
Target Start/End: Original strand, 15858393 - 15858570
Alignment:
| Q |
95 |
ttcattgggagtgttggaatgggggtgaatcaaagatgaagattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgag |
194 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| | |||| | || || || | | ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
15858393 |
ttcattgggagtgttggagtggggcggagtcaaataagaaggtccgaaacgggttcaggttgatttggcatgctgcggtttggagtatttggagggtgag |
15858492 |
T |
|
| Q |
195 |
aaatgatcgcatctttacaaatacaatttgtggggtggtggaggtggtggaggcgattaaggttttatcgtggagatg |
272 |
Q |
| |
|
||| || || || |||| | || ||||| ||||||||| | ||||||||||| |||||| | ||||||||||| |
|
|
| T |
15858493 |
aaacgaccgtatttttaacggtgtaaattgtgaagtggtggagttagtggaggcgatcaaggttctgtcgtggagatg |
15858570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 17103164 - 17103200
Alignment:
| Q |
78 |
acctccgaatttgttcattcattgggagtgttggaat |
114 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
17103164 |
acctcctaatttgtccattcattgggagtgttggaat |
17103200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 34326254 - 34326297
Alignment:
| Q |
157 |
atttggcacgccgcggtttggagtatttggagggtgagaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
34326254 |
atttggcacgccgcggtttggactatttggagagttagaaatga |
34326297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 14849270 - 14849237
Alignment:
| Q |
79 |
cctccgaatttgttcattcattgggagtgttgga |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
14849270 |
cctccgaatttgtttattcattgggagtgttgga |
14849237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 19110146 - 19110114
Alignment:
| Q |
82 |
ccgaatttgttcattcattgggagtgttggaat |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
19110146 |
ccgaatttgttcattcattggaagtgttggaat |
19110114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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