View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_9 (Length: 550)
Name: NF13588_low_9
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_9 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Original strand, 51840105 - 51840626
Alignment:
| Q |
18 |
aaatacgcacctaaccaaattatctttagttgaaagccttttattcagttgcctctacgcaaatagagacactttgagatacaccactttattttaaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
51840105 |
aaatacgcacctaaccaaattatctttagttggaagtcttttattcagttgcctctacgtaaatagagacactttgagatacaccactttatttcaaatg |
51840204 |
T |
|
| Q |
118 |
atgttcgtgaaagacgcttgagcttgctaatcatcatacatcaacaaattg---actccttttatcgagtaaccttgtacaatatctagtttccaaaacc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51840205 |
atgttcgtgaaagacgcttgagcttgctaatcatcatacatcaacaaattgtaaactccttttaccgagtaaccttgtacaatatctagtttccaaaacc |
51840304 |
T |
|
| Q |
215 |
aagtatttgcactagaaacttgcaaaacaatgttatccaacaaagaacaacactttgcaaccagttcctccttccgagcaaaaagcctcttccacctcca |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840305 |
aaatatttgcactagaaacttgcaaaacaatgttatccaacaaagaacaacactttgcaaccagttcctccttccgagcaaaaagcctcttccacctcca |
51840404 |
T |
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| Q |
315 |
ttcttcatcctcaacccctcattctaatctcctcttctcaatgactgtaatattagaatcaacatgcaaataaaaaatccgactaaatctatcacgtaac |
414 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51840405 |
ttcttcaccctcaacccctcattctaatctcctcttctcaatgacggtaatattagaatcaacatgcaaataaaaaatccgactaaatctatcacgtaac |
51840504 |
T |
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| Q |
415 |
aaacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacac |
514 |
Q |
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| T |
51840505 |
aaacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacac |
51840604 |
T |
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| Q |
515 |
ctactccctatctaactccaga |
536 |
Q |
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| T |
51840605 |
ctactccctatctaactccaga |
51840626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 22950253 - 22950166
Alignment:
| Q |
171 |
tccttttatcgagtaaccttgtacaatatctagtttccaaaaccaagtatttgcactagaaacttgcaaaacaatgttatccaacaaa |
258 |
Q |
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| T |
22950253 |
tccttttacggagtaaccatgaactaaatccagtttccaaaaccaagtattcgcaataaaatcctgcaaaaaaatattatccaacaaa |
22950166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 30906239 - 30906173
Alignment:
| Q |
202 |
agtttccaaaaccaagtatttgcactagaaacttgcaaaacaatgttatccaacaaagaacaacact |
268 |
Q |
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|||||| |||||||||||| |||| | |||||| |||||||| ||||| |||||||||||||||| |
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| T |
30906239 |
agtttcaaaaaccaagtatctgcaatctaaacttaaaaaacaatattatctaacaaagaacaacact |
30906173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 1306 - 1413
Alignment:
| Q |
416 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
515 |
Q |
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|||||||||||| ||||||||| || || ||||||||||||||||||||| || | |||| ||||| || || |||| |||||| ||| |||| || |
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| T |
1306 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
1405 |
T |
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| Q |
516 |
tactccct |
523 |
Q |
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| T |
1406 |
tactccct |
1413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 523
Target Start/End: Complemental strand, 10107478 - 10107371
Alignment:
| Q |
416 |
aacccccttccaaccaaggatcattctaagaagagaaactttcaccattacataggcgacaacccaaactaacctcaaatcaacctctctcccgcacacc |
515 |
Q |
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|||||||||||| ||||||||| || || ||||||||||||||||||||| || | |||| ||||| || || |||| |||||| ||| |||| || |
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| T |
10107478 |
aacccccttccagccaaggatcgtttcaaaaagagaaactttcaccattacctacgtgacacaccaaattagccgcaaaccaacctgcctcaggcacgcc |
10107379 |
T |
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| Q |
516 |
tactccct |
523 |
Q |
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|||||||| |
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| T |
10107378 |
tactccct |
10107371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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