View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13589_high_1 (Length: 413)
Name: NF13589_high_1
Description: NF13589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13589_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 36388551 - 36388302
Alignment:
| Q |
1 |
caaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacattgatataccata |
100 |
Q |
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| T |
36388551 |
caaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacattgatataccata |
36388452 |
T |
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| Q |
101 |
tggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagtcagaatgattgcaact |
200 |
Q |
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| T |
36388451 |
tggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagtcagaatgattgcaact |
36388352 |
T |
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| Q |
201 |
agtaattaatataaagaacaattgcaattatagaagctacaaggattgca |
250 |
Q |
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| T |
36388351 |
agtaattaatataaagaacaattgcaattatagaagctacaagaattgca |
36388302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 218 - 392
Target Start/End: Complemental strand, 36388226 - 36388052
Alignment:
| Q |
218 |
acaattgcaattatagaagctacaaggattgcagtcaacctctttttatcaaaaactccttttcgttttctgtagtaattggctgagaagaataagaaag |
317 |
Q |
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| T |
36388226 |
acaattgcaattatagaagctacaagaattgcagccaacctctttttatcaagaactccttttcgttttctgtagtaattggctgataagaagaagaaag |
36388127 |
T |
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| Q |
318 |
tataaataaattcaaactacaccttaatggcataaactttggaaagaaacacacaatacgagtgtatctcttacc |
392 |
Q |
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| T |
36388126 |
tataaataagttcaaactacaccttaatggcgtcaactttggaaagaaaaacacaataggagtgtatatcttacc |
36388052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 36412262 - 36412171
Alignment:
| Q |
218 |
acaattgcaattatagaagctacaaggattgcagtcaacctctttttatcaaaaactccttttcgttttctgtagtaattggctgagaagaa |
309 |
Q |
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|||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||| | |||| ||| |||||| ||||| ||||| |
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| T |
36412262 |
acaattgcaactatagaagctacaagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaa |
36412171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 36417593 - 36417502
Alignment:
| Q |
218 |
acaattgcaattatagaagctacaaggattgcagtcaacctctttttatcaaaaactccttttcgttttctgtagtaattggctgagaagaa |
309 |
Q |
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| T |
36417593 |
acaattgcaactatagaagctacaagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaa |
36417502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 36374607 - 36374561
Alignment:
| Q |
95 |
accatatggcacaaaatccatgcaatagttgaacaccacaaaaagaa |
141 |
Q |
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| T |
36374607 |
accatattgcacacagtccatgtaatagttgaacaccacaaaaagaa |
36374561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 36426421 - 36426375
Alignment:
| Q |
218 |
acaattgcaattatagaagctacaaggattgcagtcaacctcttttt |
264 |
Q |
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| T |
36426421 |
acaattgcaactatagaagctacaagaattgcagctaacctcttttt |
36426375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 36404940 - 36404855
Alignment:
| Q |
218 |
acaattgcaattatagaagctacaaggattgcagtcaacctctttttatcaaaaactccttttcgttttctgtagtaattggctga |
303 |
Q |
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| T |
36404940 |
acaattgcaacaatagaagctaccagaattgcagccaacctctttttgtcaagtgctcctttgctttttttgttgtaattagctga |
36404855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 36434251 - 36434167
Alignment:
| Q |
224 |
gcaattatagaagctacaaggattgcagtcaacctctttttatcaaaaactccttttcgttttctgtagtaattggctgagaaga |
308 |
Q |
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|||| |||||||||||| | ||||||| |||||| || |||| | ||||| || | |||||||||||||||||||||||||| |
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| T |
36434251 |
gcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaattggctgagaaga |
36434167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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