View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_101 (Length: 291)

Name: NF1358_high_101
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_101
NF1358_high_101
[»] chr7 (17 HSPs)
chr7 (1-281)||(12911410-12911690)
chr7 (148-278)||(10288511-10288641)
chr7 (9-251)||(22077890-22078135)
chr7 (179-281)||(40106197-40106299)
chr7 (148-276)||(49170023-49170153)
chr7 (148-281)||(12196413-12196547)
chr7 (1-127)||(49170137-49170263)
chr7 (183-281)||(11036063-11036162)
chr7 (183-278)||(15873695-15873790)
chr7 (57-161)||(12196497-12196600)
chr7 (110-251)||(21491194-21491338)
chr7 (147-261)||(48653534-48653649)
chr7 (185-251)||(9993756-9993822)
chr7 (239-281)||(40106295-40106338)
chr7 (239-280)||(11036025-11036067)
chr7 (247-276)||(10288474-10288503)
chr7 (247-276)||(15873658-15873687)
[»] chr5 (15 HSPs)
chr5 (1-281)||(30910006-30910287)
chr5 (148-281)||(40691231-40691364)
chr5 (110-275)||(38001301-38001463)
chr5 (1-127)||(40691120-40691247)
chr5 (183-278)||(537211-537306)
chr5 (114-261)||(6309083-6309237)
chr5 (113-261)||(25101617-25101773)
chr5 (113-261)||(25160710-25160866)
chr5 (144-200)||(6309076-6309132)
chr5 (147-246)||(42861769-42861869)
chr5 (110-261)||(4557694-4557850)
chr5 (251-281)||(38001478-38001508)
chr5 (247-276)||(537314-537343)
chr5 (155-200)||(6309051-6309096)
chr5 (145-195)||(27026847-27026899)
[»] chr2 (16 HSPs)
chr2 (37-278)||(40447731-40447967)
chr2 (9-281)||(18292411-18292693)
chr2 (37-251)||(36731900-36732116)
chr2 (154-279)||(40729146-40729271)
chr2 (148-281)||(34397536-34397667)
chr2 (180-278)||(41339973-41340071)
chr2 (191-278)||(28266832-28266919)
chr2 (9-164)||(40729225-40729376)
chr2 (147-253)||(12774137-12774244)
chr2 (111-261)||(44788896-44789053)
chr2 (147-248)||(35670502-35670604)
chr2 (122-200)||(44788870-44788948)
chr2 (111-162)||(12774192-12774243)
chr2 (247-276)||(40447975-40448004)
chr2 (247-276)||(40729110-40729139)
chr2 (144-227)||(29270994-29271078)
[»] chr1 (22 HSPs)
chr1 (37-278)||(338358-338594)
chr1 (148-278)||(43407087-43407217)
chr1 (110-278)||(37666898-37667067)
chr1 (157-269)||(9537120-9537232)
chr1 (154-281)||(8421924-8422051)
chr1 (158-281)||(33007368-33007491)
chr1 (37-99)||(8421848-8421910)
chr1 (147-281)||(25921842-25921976)
chr1 (179-261)||(16075129-16075211)
chr1 (111-200)||(6836257-6836346)
chr1 (9-74)||(9537276-9537341)
chr1 (110-261)||(35761741-35761894)
chr1 (110-261)||(19198451-19198607)
chr1 (147-251)||(18472635-18472740)
chr1 (210-261)||(6836394-6836445)
chr1 (190-258)||(28561815-28561885)
chr1 (109-162)||(16075095-16075148)
chr1 (247-278)||(9537068-9537099)
chr1 (247-276)||(338602-338631)
chr1 (190-227)||(26317617-26317654)
chr1 (247-276)||(37666861-37666890)
chr1 (247-276)||(43407050-43407079)
[»] chr4 (15 HSPs)
chr4 (46-278)||(40459210-40459437)
chr4 (154-281)||(55162516-55162643)
chr4 (1-127)||(55162400-55162526)
chr4 (155-281)||(13652896-13653024)
chr4 (155-281)||(13661021-13661149)
chr4 (166-281)||(28968956-28969076)
chr4 (1-111)||(28969072-28969184)
chr4 (111-200)||(69639-69728)
chr4 (111-261)||(69676-69833)
chr4 (179-257)||(2761801-2761879)
chr4 (110-261)||(49499418-49499572)
chr4 (239-281)||(55162639-55162681)
chr4 (239-276)||(55162677-55162715)
chr4 (247-276)||(40459445-40459474)
chr4 (144-198)||(55162605-55162661)
[»] chr3 (12 HSPs)
chr3 (148-278)||(7336414-7336544)
chr3 (110-278)||(5004440-5004609)
chr3 (110-281)||(16975636-16975809)
chr3 (183-278)||(46404321-46404416)
chr3 (187-281)||(43277763-43277853)
chr3 (183-251)||(9104571-9104640)
chr3 (111-200)||(17542462-17542551)
chr3 (239-276)||(16975805-16975843)
chr3 (247-276)||(5004403-5004432)
chr3 (247-276)||(7336377-7336406)
chr3 (200-255)||(8731213-8731269)
chr3 (200-255)||(9083100-9083156)
[»] chr6 (9 HSPs)
chr6 (110-278)||(10751280-10751449)
chr6 (196-281)||(23260331-23260416)
chr6 (183-278)||(34636578-34636673)
chr6 (110-261)||(32449954-32450107)
chr6 (147-260)||(13773121-13773235)
chr6 (122-227)||(26182412-26182518)
chr6 (247-276)||(23260297-23260326)
chr6 (247-276)||(34636681-34636710)
chr6 (190-256)||(24163327-24163395)
[»] scaffold1838 (3 HSPs)
scaffold1838 (148-281)||(542-675)
scaffold1838 (9-128)||(439-559)
scaffold1838 (239-281)||(671-714)
[»] chr8 (11 HSPs)
chr8 (168-281)||(41958139-41958253)
chr8 (144-262)||(44436474-44436592)
chr8 (144-251)||(22635730-22635845)
chr8 (144-200)||(44436438-44436494)
chr8 (194-260)||(40841215-40841282)
chr8 (17-71)||(44436309-44436363)
chr8 (144-200)||(44436402-44436458)
chr8 (144-251)||(22816023-22816140)
chr8 (138-197)||(3189199-3189258)
chr8 (207-249)||(3189139-3189181)
chr8 (144-185)||(22816140-22816181)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-251)||(33038-33265)
[»] scaffold0013 (1 HSPs)
scaffold0013 (111-198)||(242844-242931)
[»] scaffold0413 (1 HSPs)
scaffold0413 (110-205)||(9185-9281)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 12911690 - 12911410
Alignment:
Q  1 atgttacattttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatact 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12911690 atgttacatttttgatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatatt 12911591  T
Q  101 tgactgtaattgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  12911590 tgactgtaattgccttagtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctgtgtggtaccttagtggcgggtt 12911491  T
Q  201 ttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    ||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  12911490 ttagtctgcattttcataatcatgtatggcatatgcatctgtgtggtgccttagtggtaggaattgcaattatattctgtg 12911410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 10288641 - 10288511
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  10288641 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 10288542  T
Q  248 gccttagtggcgggaattgcaattatattct 278  Q
    |||||||||||||||||||||||||||||||    
T  10288541 gccttagtggcgggaattgcaattatattct 10288511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 22077890 - 22078135
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgac--tg 106  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||| ||||||  |||||||||| |||||| |||||  ||    
T  22077890 ttttttatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg-ttgtgtgtttgatgatgcgttaatatttgactatg 22077988  T
Q  107 taattgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctatgtggtgccttagtggcgggttttagt 205  Q
     | ||||||||||| ||||||||||  |||| |||| ||||||||| ||||||||| ||  || ||||| |  ||| |||||| ||||||||| ||||||    
T  22077989 catttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttagt 22078088  T
Q  206 cttcattttcatgatcatgca-tggcatatgcacctgtgtggtgcct 251  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||||    
T  22078089 cttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 22078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 40106197 - 40106299
Alignment:
Q  179 tgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  40106197 tgtggtgccttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattatattct 40106296  T
Q  279 gtg 281  Q
    |||    
T  40106297 gtg 40106299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 49170153 - 49170023
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg- 246  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||     
T  49170153 tgccttagtggcgggttgtaattatattctgtgtggtgtcttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgga 49170054  T
Q  247 tgccttagtgg-cgggaattgcaattatatt 276  Q
    ||||||||||| |||||||||||||||||||    
T  49170053 tgccttagtggccgggaattgcaattatatt 49170023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 12196547 - 12196413
Alignment:
Q  148 tgcctaagtggcgggttataattatat-tctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 246  Q
    ||||| ||||| ||||||  ||||||| ||| |||||||||||||||||||  |||||||| ||||||||||||||| |||||||||| || ||||||||    
T  12196547 tgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcggactttagtctgcattttcatgatcatacatggcatattcatctgtgtgg 12196448  T
Q  247 tgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||||||||||||||||||||||||||    
T  12196447 tgccttagtggcgggaattgcaattatattctgtg 12196413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 49170263 - 49170137
Alignment:
Q  1 atgttacatttttt--atgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaata 98  Q
    ||||||||||||||  ||||||||||||| |  |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49170263 atgttacatttttttgatgaattaaagaaga--gaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaata 49170166  T
Q  99 cttgactgtaattgccttagtgacgggtt 127  Q
    ||||| |||||||||||||||| ||||||    
T  49170165 cttgaatgtaattgccttagtggcgggtt 49170137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 11036162 - 11036063
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatg-gcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  11036162 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcgggaattgcaattatattctgtg 11036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 15873790 - 15873695
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  15873790 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 15873695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 12196600 - 12196497
Alignment:
Q  57 aatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtgacgggttaatatcatatttcttagtggtgcctaagt 156  Q
    ||||||||||| |||||| ||||   ||||||||| |||||| ||| |||||||||||||||||  |||||||||| |||| |||  ||||||||| |||    
T  12196600 aatgattgactgttggtt-gtgtgtctgatgatgcgttaatatttggctgtaattgccttagtggtgggttaatattatatatctgtgtggtgccttagt 12196502  T
Q  157 ggcgg 161  Q
    |||||    
T  12196501 ggcgg 12196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 21491338 - 21491194
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctat-gtggtgccttagtggcgggttttagtctt 208  Q
    |||||||||||  |||||||||  ||||||||  ||||||||| |||||||||  |  || |||||  || || |||||| |||||| || |||||||||    
T  21491338 ttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcattgttgtgcctaagtggctggatttagtctt 21491239  T
Q  209 catt-ttcatgatcatgcatg-gcatatgcacctgtgtggtgcct 251  Q
    |||| |||||||||||||||  ||||||||| |||||||||||||    
T  21491238 cattgttcatgatcatgcattagcatatgcatctgtgtggtgcct 21491194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 48653649 - 48653534
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| |||||||||||| | ||||| |||| |||||||||| ||||||||| || |   | |||||||||||||||||||  |||||||| |||||||    
T  48653649 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggattcatgatccattttcatgatcatgcataacatatgcatctgtgtg 48653550  T
Q  246 gtgccttagtggcggg 261  Q
    ||| ||  ||||||||    
T  48653549 gtgtctgtgtggcggg 48653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 9993756 - 9993822
Alignment:
Q  185 gccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 251  Q
    |||| ||||||||| |||||| |||||| |||| |||||||||||||||||||| | ||||||||||    
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgcatggcatatgcacgtttgtggtgcct 9993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 40106295 - 40106338
Alignment:
Q  239 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  40106295 ctgtgtggatgccttagtggcaggaattgcaattatattctgtg 40106338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 11036067 - 11036025
Alignment:
Q  239 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgt 280  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  11036067 ctgtgtggatgccttagtggcgggaattgcaattatactctgt 11036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 10288503 - 10288474
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  10288503 tgccttagtggcgggaattgcaattatatt 10288474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 15873687 - 15873658
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  15873687 tgccttagtggcgggaattgcaattatatt 15873658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 30910006 - 30910287
Alignment:
Q  1 atgttacattttttatgaattaaagaaaaaa--gaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaata 98  Q
    ||||||||||||| | |||||||||||||||  |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  30910006 atgttacatttttgacgaattaaagaaaaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtttgtgtacttgatcatgcattaata 30910105  T
Q  99 cttgactgtaattgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcggg 198  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||    
T  30910106 cttgattgtaattgccttagtggcaagttaatatcatatttcttagtggtgcctaagtggcgggttataattatattatgtgtggtgccttagtggc-gg 30910204  T
Q  199 ttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
     |||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||| |||||||||||||||||||||||||    
T  30910205 atttagtctgcatttccatgatcatgcatggcatatgcatctgtgtggtctcttagtagcgggaattgcaattatattctgtg 30910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 40691231 - 40691364
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||| ||||||||||| | |||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  40691231 tgccttagtggcgggttgtgattatattatgtgtggtgccttagtgacgggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggt 40691330  T
Q  248 gccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||| |||||| ||||||||||||||||||||    
T  40691331 gccttattggcggaaattgcaattatattctgtg 40691364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 275
Target Start/End: Original strand, 38001301 - 38001463
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttc 209  Q
    ||||||||||| ||||||||||| |||| ||   ||||||| | ||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||| |    
T  38001301 ttgccttagtggcgggttaatattatatatccgtgtggtgctttagtggcgagttataattatattctgtgtggtgtcttagtggcgggttttaatctgc 38001400  T
Q  210 attttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatat 275  Q
    ||||||||||||  ||||| |||||||| |||||||||| | ||||||||||||||||||||||||    
T  38001401 attttcatgatc--gcatgacatatgcatctgtgtggtgtc-tagtggcgggaattgcaattatat 38001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 40691120 - 40691247
Alignment:
Q  1 atgttacatttttt---atgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaat 97  Q
    ||||||||||||||   ||||||||||||| ||| |   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40691120 atgttacattttttttgatgaattaaagaagaaaaag--atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaat 40691217  T
Q  98 acttgactgtaattgccttagtgacgggtt 127  Q
    ||||||||| ||||||||||||| ||||||    
T  40691218 acttgactggaattgccttagtggcgggtt 40691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 537211 - 537306
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  537211 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 537306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 6309083 - 6309237
Alignment:
Q  114 cttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggt--------tttagt 205  Q
    ||||||| ||||||| ||| ||||| ||  ||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||        | | |     
T  6309083 cttagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggttaatatcatattgc 6309181  T
Q  206 cttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
     || |||||||||||||||||||||||||||| |||||||||| ||  ||||||||    
T  6309182 atttattttcatgatcatgcatggcatatgcatctgtgtggtgtctgtgtggcggg 6309237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 25101773 - 25101617
Alignment:
Q  113 ccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtc------ 206  Q
    |||||||| ||||||||  | ||| ||||| ||| ||||| |||||||||||  | ||||||||| |||||||||| |||||| ||||    ||          
T  25101773 ccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggttaatatcatattg 25101674  T
Q  207 --ttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
      ||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  25101673 cattcattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 25160866 - 25160710
Alignment:
Q  113 ccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtc------ 206  Q
    |||||||| ||||||||  | ||| ||||| ||| ||||| |||||||||||  | ||||||||| |||||||||| |||||| ||||    ||          
T  25160866 ccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggttgcacttatattctgtgtggtgcctcagtggcaggttaatatcatattg 25160767  T
Q  207 --ttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
      ||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  25160766 cattcattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 6309076 - 6309132
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||| || ||||||||||||  |||||||||| ||||||||||||||||||||||    
T  6309076 gtggtgtcttagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6309132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 42861769 - 42861869
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| |||||||||||| | ||||| |||| ||||||||||  |||||||| || |   | ||||||||||||||||||| ||||||||| |||||||    
T  42861769 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcatagcatatgcatctgtgtg 42861868  T
Q  246 g 246  Q
    |    
T  42861869 g 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 4557850 - 4557694
Alignment:
Q  110 ttgccttagtgacgggt--taatatcatatttcttagtggtgcctaagtggcgggttataattatattctat-gtggtgccttagtggcgggttttagtc 206  Q
    ||||||||||| |||||  |||||  ||||||||  ||||||||| ||||||| | ||  || |||||  || || |||||| |||||| || |||||||    
T  4557850 ttgccttagtggcgggtattaataatatatttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggctggatttagtc 4557751  T
Q  207 ttcatt-ttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||||| |||||||||||||| | ||||||||| || ||||||||||  ||||||||    
T  4557750 ttcattgttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcggg 4557694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 38001478 - 38001508
Alignment:
Q  251 ttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||||||||||||||||||||||    
T  38001478 ttagtggcgggaattgcaattatattctgtg 38001508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 537314 - 537343
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  537314 tgccttagtggcgggaattgcaattatatt 537343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 6309051 - 6309096
Alignment:
Q  155 gtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||||    
T  6309051 gtggcgggttactattatattctgtgtggtgtcttagtggcgggtt 6309096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 27026847 - 27026899
Alignment:
Q  145 tggtgcctaagtggcggg-ttataattatattctatgtgg-tgccttagtggc 195  Q
    |||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||    
T  27026847 tggtgccttagtggcgggattataattatattctgtgtggatgccttagtggc 27026899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 40447731 - 40447967
Alignment:
Q  37 atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtgacgggttaatatcata 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        
T  40447731 atgataatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtggcgggttaatat---- 40447826  T
Q  137 tttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgc 236  Q
     ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  40447827 -ttcttagtggtgcctaactggcgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgc 40447925  T
Q  237 acctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    | |||||||||||||||||||||||| |||||||||||||||    
T  40447926 atctgtgtggtgccttagtggcgggatttgcaattatattct 40447967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 18292693 - 18292411
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttga----- 103  Q
    |||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||  |||||| ||||  ||||||||||||||||| |||          
T  18292693 ttttttatgaataaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggttggtt-gtgtgtttgatgatgcattaatatttggttaat 18292595  T
Q  104 ------ctgtaattgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgg 197  Q
          |||||||||||||||||  |||||||||| |||| |||  | ||||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  18292594 atttggctgtaattgccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataattatattttgtgtggtgccttagtggcgg 18292495  T
Q  198 gttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18292494 gttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtg 18292411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 36732116 - 36731900
Alignment:
Q  37 atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtgacgggttaatatcata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  36732116 atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcgtgatgatgcattaatacttgattgtaattgccttaggggcgggttaatatcata 36732017  T
Q  137 tttcttagtggtgcctaagtggcgggttataatt---atattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcata 233  Q
    |||||||||| ||||||||||||||| | || ||   || ||||  |||||| |  ||||||||| |||||| || ||| |||| |||||||||||||||    
T  36732016 tttcttagtgatgcctaagtggcgggatttagtttgcat-ttcttagtggtgtccaagtggcgggatttagtttttattatcattatcatgcatggcata 36731918  T
Q  234 tgcacctgtgtggtgcct 251  Q
    ||||  |||||| |||||    
T  36731917 tgcatttgtgtgctgcct 36731900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 40729271 - 40729146
Alignment:
Q  154 agtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcctta 253  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  40729271 agtggcaggttataattatattctgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgcctta 40729172  T
Q  254 gtggcgggaattgcaattatattctg 279  Q
    |||| || ||||||||||||||||||    
T  40729171 gtggtggaaattgcaattatattctg 40729146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 34397667 - 34397536
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||| |||||||||    
T  34397667 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctgcatt--catgatcatgcatggtatatgcatctgtgtggt 34397570  T
Q  248 gccttagtggcgggaattgcaattatattctgtg 281  Q
    ||||||||||| | ||||||||||||||||||||    
T  34397569 gccttagtggcagaaattgcaattatattctgtg 34397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 41340071 - 41339973
Alignment:
Q  180 gtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41340071 gtggtgccttagtggcgggttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 41339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 28266919 - 28266832
Alignment:
Q  191 gtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg-tgccttagtggcgggaattgcaattatattct 278  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| || |||||||||||| ||| ||||||||||||    
T  28266919 gtggcgggatttagtcttcattttaatgatcatgcatggcatatgcatctatgtggatgtcttagtggcggg-attacaattatattct 28266832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 40729376 - 40729225
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgta 108  Q
    |||||||||||||||| || |  |||  ||||| |||||| ||||||||||| | ||||||||||| ||||  |||||||||| |||||| |||||||||    
T  40729376 ttttttatgaattaaataata--gaaagatgaacatgtgaatttgtgaaatggtggacttttggtt-gtgtgtttgatgatgcgttaatatttgactgta 40729280  T
Q  109 attgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggtt 164  Q
    |||| ||||||| | |||||  || ||| ||||  ||||||||| |||||||||||    
T  40729279 attgtcttagtggcaggttataattata-ttctgtgtggtgccttagtggcgggtt 40729225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 12774244 - 12774137
Alignment:
Q  147 gtgcctaagtggcgggttataattatat-tctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| ||||||||| ||  || |||| ||| |||||||||| ||||||||| || |   ||||||||||||||||||||| ||||||||| |||||||    
T  12774244 gtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgcatcgcatatgcatctgtgtg 12774145  T
Q  246 gtgcctta 253  Q
    ||||||||    
T  12774144 gtgcctta 12774137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 44788896 - 44789053
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcggg--------tttt 202  Q
    ||||| |||| ||||||| ||| ||||||  | ||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||         | |    
T  44788896 tgcctaagtggcgggttactattatattttgt-gtggtgccttagtggagggttacaattatattctgtgtggtgccttagtggcgggctaatatcatat 44788994  T
Q  203 agtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
     |  || ||||||||||||||||| |||||||||| |||||||||||||  ||||||||    
T  44788995 tgcatttattttcatgatcatgcaaggcatatgcatctgtgtggtgcctgtgtggcggg 44789053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 35670604 - 35670502
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| |||||||||||| | ||||| |||| ||||||||||  |||||||| || |   | ||||||||||||||||||| ||||||||| |||||||    
T  35670604 gtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatgatccattttcatgatcatgcatagcatatgcatctgtgtg 35670505  T
Q  246 gtg 248  Q
    |||    
T  35670504 gtg 35670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 44788870 - 44788948
Alignment:
Q  122 cgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    ||||| ||||||||||| | | || |||||||||||||||||||  |||||||| | |||||||||||||||| |||||    
T  44788870 cgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatattttgtgtggtgccttagtggagggtt 44788948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 12774243 - 12774192
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcggg 162  Q
    |||||||||| |||| ||||||||||| |||| |||||||||||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcggg 12774192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 40447975 - 40448004
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  40447975 tgccttagtggcgggaattgcaattatatt 40448004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 40729139 - 40729110
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  40729139 tgccttagtggcgggaattgcaattatatt 40729110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 29270994 - 29271078
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatatt-ctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcat 227  Q
    ||||||||| ||||| ||||||  || ||||| || || ||||||| |||| |||| |||| | |||||||||||||||||||||    
T  29270994 gtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcat 29271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 338358 - 338594
Alignment:
Q  37 atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtgacgggttaatatcata 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        
T  338358 atgagaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtggcgggttaatat---- 338453  T
Q  137 tttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgc 236  Q
     ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  338454 -ttcttagtggtgcctaactggcgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgc 338552  T
Q  237 acctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    | |||||||||||||||||||||||| |||||||||||||||    
T  338553 atctgtgtggtgccttagtggcgggatttgcaattatattct 338594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 43407217 - 43407087
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  43407217 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 43407118  T
Q  248 gccttagtggcgggaattgcaattatattct 278  Q
    |||||||||||||||||||||||||||||||    
T  43407117 gccttagtggcgggaattgcaattatattct 43407087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 37667067 - 37666898
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatg-tggtgccttagtggcgggttttagtctt 208  Q
    ||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  ||  | ||||||||||||||| |||||||||     
T  37667067 ttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggattttagtctg 37666968  T
Q  209 cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37666967 cattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 37666898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 9537232 - 9537120
Alignment:
Q  157 ggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtg 256  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  9537232 ggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtg 9537133  T
Q  257 gcgggaattgcaa 269  Q
    |||||||||||||    
T  9537132 gcgggaattgcaa 9537120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 8421924 - 8422051
Alignment:
Q  154 agtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcctta 253  Q
    |||||| |||| | |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  8421924 agtggcaggttgtgattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgcctta 8422023  T
Q  254 gtggcgggaattgcaattatattctgtg 281  Q
    ||||||| ||||||||||||||||||||    
T  8422024 gtggcggaaattgcaattatattctgtg 8422051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 33007491 - 33007368
Alignment:
Q  158 gcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtgg 257  Q
    |||||||||||||||||||||||||||| ||| |||| || ||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||||||    
T  33007491 gcgggttataattatattctatgtggtgtcttcgtggtggattttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtgg 33007392  T
Q  258 cgggaattgcaattatattctgtg 281  Q
    ||||||||||||||||||| ||||    
T  33007391 cgggaattgcaattatattatgtg 33007368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 8421848 - 8421910
Alignment:
Q  37 atgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatac 99  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  8421848 atgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatgcattaatac 8421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 25921842 - 25921976
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| ||||| |||||| | ||||| |||| |||||||||| |||| |||| ||| || | ||||||||||||||| |||| |||||||| |||||||    
T  25921842 gtgccttagtggtgggttaaacttataattctttgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatgacatatgcatctgtgtg 25921941  T
Q  246 gtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||| ||| ||| |||||||||| ||||    
T  25921942 gtgccttagtggtggg-attacaattatattttgtg 25921976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 16075129 - 16075211
Alignment:
Q  179 tgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||||||||| ||||||||| |||||  | ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  16075129 tgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtgtggtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 6836257 - 6836346
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||| ||| ||||| ||||||||||| | | || |||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  6836257 tgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6836346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9537341 - 9537276
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtt 74  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||    
T  9537341 ttttttatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttggtt 9537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 35761894 - 35761741
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctat-gtggtgccttagtggcgggttttagtctt 208  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||| |||||| || ||  || ||| |  || || |||||| ||||||||  |||| ||||    
T  35761894 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgcattgttgtgcctaagtggcggaatttaatctt 35761795  T
Q  209 cattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||||||||||||||||| | ||||||||| |||||||||||||  ||||||||    
T  35761794 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 35761741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 19198607 - 19198451
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggtt---ataattatatt-ctatgtggtgccttagtggcgggttttagt 205  Q
    |||||||| |||||||||||||  ||||||||| ||||||||| ||||||||| |   || || ||||| |  ||| || ||| ||||||||  |||| |    
T  19198607 ttgccttaatgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatcatattgcattgttgtacctaagtggcggaatttaat 19198508  T
Q  206 cttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    ||||||||| ||||||||||| |  |||||||| |||||||||||||  ||||||||    
T  19198507 cttcatttttatgatcatgcattaacatatgcatctgtgtggtgcctgtgtggcggg 19198451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 18472740 - 18472635
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| |||||||||||| | ||||| |||| ||||||| || ||||| ||| || |   | ||||||||||||||||||| ||||||||| |||||||    
T  18472740 gtgccttagtggcgggttaaacttataattctctgtggtgtctaagtggtgggattcatgatccattttcatgatcatgcatagcatatgcatctgtgtg 18472641  T
Q  246 gtgcct 251  Q
    ||||||    
T  18472640 gtgcct 18472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 6836394 - 6836445
Alignment:
Q  210 attttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 6836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 28561815 - 28561885
Alignment:
Q  190 agtggcgggttttagtcttcattttcatgatcatgcatggcatatgca--cctgtgtggtgccttagtggc 258  Q
    ||||||||| |||| | ||||||||||||||||||||||  |||||||   ||||||||||||||||||||    
T  28561815 agtggcgggatttaattttcattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtggc 28561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 16075095 - 16075148
Alignment:
Q  109 attgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcggg 162  Q
    ||||||||| || ||||||||||||||||| ||| ||||||||| |||||||||    
T  16075095 attgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcggg 16075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 278
Target Start/End: Complemental strand, 9537099 - 9537068
Alignment:
Q  247 tgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||||||||||||    
T  9537099 tgccttagtggcgggaattgcaattatattct 9537068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 338602 - 338631
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  338602 tgccttagtggcgggaattgcaattatatt 338631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 26317617 - 26317654
Alignment:
Q  190 agtggcgggttttagtcttcattttcatgatcatgcat 227  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  26317617 agtggcggaatttagtcttcattttcatgatcatgcat 26317654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 37666890 - 37666861
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  37666890 tgccttagtggcgggaattgcaattatatt 37666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 43407079 - 43407050
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  43407079 tgccttagtggcgggaattgcaattatatt 43407050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 46 - 278
Target Start/End: Original strand, 40459210 - 40459437
Alignment:
Q  46 tgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgtaattgccttagtgacgggttaatatcatatttcttagt 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||     ||||||||    
T  40459210 tgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgaatgtaattgccttagtggcggattaatat-----ttcttagt 40459304  T
Q  146 ggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||||||||| |||||||| |||||||    
T  40459305 ggtgcctaagtggcgggttataattatattctatgttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgtcatatgcatctgtgtg 40459404  T
Q  246 gtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||| |||||||||||||||    
T  40459405 gtgccttagtggcgggatttgcaattatattct 40459437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 55162516 - 55162643
Alignment:
Q  154 agtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcctta 253  Q
    ||||||||||| | |||||||||| ||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  55162516 agtggcgggttgtgattatattctgtgtggtgccttggtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgcctta 55162615  T
Q  254 gtggcgggaattgcaattatattctgtg 281  Q
    ||||||||||||||||||||||||||||    
T  55162616 gtggcgggaattgcaattatattctgtg 55162643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 55162400 - 55162526
Alignment:
Q  1 atgttacatttttt--atgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaata 98  Q
    ||||||||||||||  ||||||||||||| |  |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55162400 atgttacatttttttgatgaattaaagaaga--gaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaata 55162497  T
Q  99 cttgactgtaattgccttagtgacgggtt 127  Q
    ||| ||||||||||| |||||| ||||||    
T  55162498 cttaactgtaattgcattagtggcgggtt 55162526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 13652896 - 13653024
Alignment:
Q  155 gtggcgggttataattat-attctatgtggtgccttagtggcgggttttagtctt-cattttcatgatcatgcatggcatatgcacctgtgtggtgcctt 252  Q
    ||||||||||| | |||| ||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||    
T  13652896 gtggcgggttaaacttattattctttgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgcctt 13652995  T
Q  253 agtggcgggaattgcaattatattctgtg 281  Q
    ||||||| |||||||||||||||| ||||    
T  13652996 agtggcgagaattgcaattatattttgtg 13653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 13661021 - 13661149
Alignment:
Q  155 gtggcgggttataattat-attctatgtggtgccttagtggcgggttttagtctt-cattttcatgatcatgcatggcatatgcacctgtgtggtgcctt 252  Q
    ||||||||||| | |||| ||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||    
T  13661021 gtggcgggttaaacttattattctttgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgcctt 13661120  T
Q  253 agtggcgggaattgcaattatattctgtg 281  Q
    ||||||| |||||||||||||||| ||||    
T  13661121 agtggcgagaattgcaattatattttgtg 13661149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 28969076 - 28968956
Alignment:
Q  166 taattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcat-----atgcacctgtgtggtgccttagtggcgg 260  Q
    |||||||||||| ||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||     ||||| ||||||||||||||||||||||    
T  28969076 taattatattctgtgtggtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgg 28968977  T
Q  261 gaattgcaattatattctgtg 281  Q
    |||||||||||||||| ||||    
T  28968976 gaattgcaattatattttgtg 28968956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 28969184 - 28969072
Alignment:
Q  1 atgttacatttttt---atgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaat 97  Q
    ||||||||||||||   ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||  || ||||||  |||||    
T  28969184 atgttacattttttttaatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg-ttgtgtgtttcatgatgagttaat 28969086  T
Q  98 acttgactgtaatt 111  Q
    | |||| |||||||    
T  28969085 atttgagtgtaatt 28969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 69639 - 69728
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||| ||| ||||| ||||||||||| | | || |||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  69639 tgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 69728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 69676 - 69833
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggt--------ttt 202  Q
    ||||| |||| ||||||| ||| ||||| ||  ||||||||| ||||||||||||  |||||||||| |||||||||||||||||||||        | |    
T  69676 tgcctaagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggttaatatcatat 69774  T
Q  203 agtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 261  Q
     |  || |||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  69775 tgcatttattttcatgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 69833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 2761879 - 2761801
Alignment:
Q  179 tgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtgg 257  Q
    |||||||| | ||||| ||| |||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2761879 tgtggtgcttaagtggtgggatttaggattcattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 49499418 - 49499572
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtg-gtgccttagtggcgggttttagtctt 208  Q
    ||||||||||| ||||||||||  ||||||||  ||||||||| ||||||||| |   || |||||  || |  |||||| |||||| || |||||||||    
T  49499418 ttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttttgtgcctaagtggctggatttagtctt 49499517  T
Q  209 catt-ttcatgatcatgcatg-gcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||| |||||||||||||||  ||||||||| |||||||||||||  ||||||||    
T  49499518 cattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 49499572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 55162639 - 55162681
Alignment:
Q  239 ctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55162639 ctgtgtggtgccttagtggcgggaattgcaattatattctgtg 55162681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 55162677 - 55162715
Alignment:
Q  239 ctgtgtgg-tgccttagtggcgggaattgcaattatatt 276  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  55162677 ctgtgtggatgccttagtggcgggaattgcaattatatt 55162715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 40459445 - 40459474
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  40459445 tgccttagtggcgggaattgcaattatatt 40459474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 55162605 - 55162661
Alignment:
Q  144 gtggtgcctaagtggcggg--ttataattatattctatgtggtgccttagtggcggg 198  Q
    ||||||||| |||||||||  ||  ||||||||||| ||||||||||||||||||||    
T  55162605 gtggtgccttagtggcgggaattgcaattatattctgtgtggtgccttagtggcggg 55162661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 7336544 - 7336414
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  7336544 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 7336445  T
Q  248 gccttagtggcgggaattgcaattatattct 278  Q
    |||||||||||||||||||||||||||||||    
T  7336444 gccttagtggcgggaattgcaattatattct 7336414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 5004609 - 5004440
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatg-tggtgccttagtggcgggttttagtctt 208  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  ||  | |||||||||||||||||||||||||     
T  5004609 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 5004510  T
Q  209 cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5004509 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 5004440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 16975636 - 16975809
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatg-tggtgccttagtggcggg-ttttagtct 207  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  ||  | |||||| ||||||||| |||||||||    
T  16975636 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtct 16975735  T
Q  208 tcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
     ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  16975736 gcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgggaattgcaattatattctgtg 16975809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 46404416 - 46404321
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||| | |||||||||| |  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  46404416 gtgccttagtggcgggttttagtgtgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 46404321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 43277853 - 43277763
Alignment:
Q  187 cttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||||||||||    |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43277853 cttagtggcgggttttagt----attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtg 43277763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 9104571 - 9104640
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgcct 251  Q
    |||||| ||||||| | ||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  9104571 gtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 9104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 17542551 - 17542462
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||| ||| | ||| ||||||||||| | | || ||| |||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  17542551 tgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 17542462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 16975805 - 16975843
Alignment:
Q  239 ctgtgtgg-tgccttagtggcgggaattgcaattatatt 276  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16975805 ctgtgtggatgccttagtggcgggaattgcaattatatt 16975843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 5004432 - 5004403
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  5004432 tgccttagtggcgggaattgcaattatatt 5004403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 7336406 - 7336377
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  7336406 tgccttagtggcgggaattgcaattatatt 7336377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 8731213 - 8731269
Alignment:
Q  200 tttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagt 255  Q
    ||||||||||||||||||||||||||| | |||||  || || ||||||||||||||    
T  8731213 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 9083100 - 9083156
Alignment:
Q  200 tttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagt 255  Q
    ||||||||||||||||||||||||||| | |||||  || || ||||||||||||||    
T  9083100 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 10751449 - 10751280
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatg-tggtgccttagtggcgggttttagtctt 208  Q
    ||||||||||| | ||||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  ||  | |||||||||||||||||||||||||     
T  10751449 ttgccttagtggctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagtctg 10751350  T
Q  209 cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  10751349 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattatattct 10751280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 23260416 - 23260331
Alignment:
Q  196 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23260416 gggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtg 23260331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 34636578 - 34636673
Alignment:
Q  183 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 278  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  34636578 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 34636673  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 110 - 261
Target Start/End: Complemental strand, 32450107 - 32449954
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctat-gtggtgccttagtggcgggttttagtctt 208  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  || || |||||| ||||||||| |||| ||||    
T  32450107 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtggcgggatttaatctt 32450008  T
Q  209 cattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 261  Q
    |||||||||||||||||| | ||||||||| |||||||||||||  ||||||||    
T  32450007 cattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 32449954  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 13773235 - 13773121
Alignment:
Q  147 gtgcctaagtggcgggttataattata-ttctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtg 245  Q
    |||||| |||||||||||| | ||||| |||| |||||||||| ||||||| | |  |   | ||||||||||||||||||| |||||| || |||||||    
T  13773235 gtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgagatccatgatccattttcatgatcatgcatagcatatacatctgtgtg 13773136  T
Q  246 gtgccttagtggcgg 260  Q
    ||||||  |||||||    
T  13773135 gtgcctgtgtggcgg 13773121  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 26182518 - 26182412
Alignment:
Q  122 cgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctat-gtggtgccttagtggcgggttttagtcttcattttcatgat 220  Q
    ||||||||||  ||||||||| || |||||| ||||||||| ||  || |||||  || || |||||   ||||| || |||||||||||||||||||||    
T  26182518 cgggttaataatatatttcttggtcgtgccttagtggcgggataatatcatattgcattgttgtgccactgtggcaggatttagtcttcattttcatgat 26182419  T
Q  221 catgcat 227  Q
    |||||||    
T  26182418 catgcat 26182412  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 23260326 - 23260297
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  23260326 tgccttagtggcgggaattgcaattatatt 23260297  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 34636681 - 34636710
Alignment:
Q  247 tgccttagtggcgggaattgcaattatatt 276  Q
    ||||||||||||||||||||||||||||||    
T  34636681 tgccttagtggcgggaattgcaattatatt 34636710  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 24163327 - 24163395
Alignment:
Q  190 agtggcgggttttagtcttca-ttttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtg 256  Q
    ||||||||| ||||||||||| |||||||||| ||||| | ||||||| | |||||||||| |||||||    
T  24163327 agtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtgtggtgtcttagtg 24163395  T

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Target: scaffold1838 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 542 - 675
Alignment:
Q  148 tgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 247  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||  |||||| |    
T  542 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgagttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgat 641  T
Q  248 gccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||||| |||||||||||||||| ||||||    
T  642 gccttagtggtgggaattgcaattatagtctgtg 675  T

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Target: scaffold1838; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 439 - 559
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgt-acttgatgatgcattaatacttgactgt 107  Q
    ||||| ||||||||||||||| ||||   |||||||||||||||||||||||||  |||||||||| ||||   |||||||||  |||||| ||||||||    
T  439 tttttgatgaattaaagaaaagagaaagttgaaaatgtgagtttgtgaaatgatgaacttttggttggtgtgttttgatgatgtgttaatatttgactgt 538  T
Q  108 aattgccttagtgacgggtta 128  Q
    ||||||||||||| |||||||    
T  539 aattgccttagtggcgggtta 559  T

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Target: scaffold1838; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 671 - 714
Alignment:
Q  239 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgtg 281  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  671 ctgtgtggatgccttagtggcgggaattgcaattatattctgtg 714  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 41958253 - 41958139
Alignment:
Q  168 attatattctatgtggt-gccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattg 266  Q
    ||||| |||| |||||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41958253 attattttctttgtggttgccttagtgatgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattg 41958154  T
Q  267 caattatattctgtg 281  Q
    |||||||||||||||    
T  41958153 caattatattctgtg 41958139  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 44436474 - 44436592
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtg 243  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||| |||||    
T  44436474 gtggtgccttagttgcgggttataattatattctgtgtggtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtg 44436573  T
Q  244 tggtgccttagtggcggga 262  Q
    ||||||||  |||||||||    
T  44436574 tggtgcctgtgtggcggga 44436592  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 22635845 - 22635730
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggttttagtc--------ttcattttcatgatcatgcatggcatatg 235  Q
    ||||||||| |||||| ||||  ||||||||||| |||||||||| |||||||||||    ||        |||||||||||||||||||||||||||||    
T  22635845 gtggtgccttagtggcaggttgcaattatattctgtgtggtgcctcagtggcgggttaatatcatattgcattcattttcatgatcatgcatggcatatg 22635746  T
Q  236 cacctgtgtggtgcct 251  Q
    || |||||||||||||    
T  22635745 catctgtgtggtgcct 22635730  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44436438 - 44436494
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||    
T  44436438 gtggtgccttagttgcgggttataattatattctgtgtggtgccttagttgcgggtt 44436494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 40841282 - 40841215
Alignment:
Q  194 gcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcgg 260  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||  |||||||    
T  40841282 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgg 40841215  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 44436309 - 44436363
Alignment:
Q  17 gaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttg 71  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  44436309 gaattaaagaaaaaagaaagatgaaaacgtgagattgtgaaatgattgacttttg 44436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44436402 - 44436458
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgggtt 200  Q
    |||||| || ||| |||||||||||||||||||| |||||||||||||| |||||||    
T  44436402 gtggtgtcttagttgcgggttataattatattctgtgtggtgccttagttgcgggtt 44436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 22816140 - 22816023
Alignment:
Q  144 gtggtgcctaagtggcg--ggttataattatattctatgtggtgccttagtggcgggttttagtc--------ttcattttcatgatcatgcatggcata 233  Q
    ||||||||| |||||||  ||||| ||||||||| | ||||||||||||||||||||||    ||        || ||||||||||||||||||||||||    
T  22816140 gtggtgccttagtggcgcgggttacaattatattatgtgtggtgccttagtggcgggttaatatcatactgcatttattttcatgatcatgcatggcata 22816041  T
Q  234 tgcacctgtgtggtgcct 251  Q
    |||| ||||| |||||||    
T  22816040 tgcatctgtgcggtgcct 22816023  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 3189258 - 3189199
Alignment:
Q  138 ttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcgg 197  Q
    ||||| ||||||||| |||||||||||  ||||||||||| ||||||||||  |||||||    
T  3189258 ttcttggtggtgccttagtggcgggttgcaattatattctgtgtggtgcctcggtggcgg 3189199  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 3189181 - 3189139
Alignment:
Q  207 ttcattttcatgatcatgcatggcatatgcacctgtgtggtgc 249  Q
    |||||||||||||||||||||| ||||||||  ||||||||||    
T  3189181 ttcattttcatgatcatgcatgacatatgcatttgtgtggtgc 3189139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 22816181 - 22816140
Alignment:
Q  144 gtggtgcctaagtggcgggttataattatattctatgtggtg 185  Q
    ||||||||||||||||||||||  |||||||||| |||||||    
T  22816181 gtggtgcctaagtggcgggttactattatattctgtgtggtg 22816140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 33265 - 33038
Alignment:
Q  9 ttttttatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactgta 108  Q
    ||||||||||||||||||| |  |||  |||||||||||||||||||||||||||||||||||||| |||||||||||             |||||||||    
T  33265 ttttttatgaattaaagaaga--gaaagatgaaaatgtgagtttgtgaaatgattgacttttggttcgtgtacttgat------------tttgactgta 33180  T
Q  109 attgccttagtgacgggttaat---atcatatttcttagtggtgcctaagtggcgggttataatt---atattctatgtggtgccttagtggcgggtttt 202  Q
    |||| |||| || |||||||||   ||||||||| ||||||||||||| |||| ||| | || ||   || ||||  ||||||||| ||||||||| |||    
T  33179 attgtcttaatggcgggttaatatcatcatattttttagtggtgcctatgtggtgggatttagtttgcat-ttcttagtggtgcctaagtggcgggattt 33081  T
Q  203 agtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 251  Q
    ||      ||||||| |||||||||| |||||||| |||||||||||||    
T  33080 ag------ttttcattatcatgcatgacatatgcatctgtgtggtgcct 33038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 242931 - 242844
Alignment:
Q  111 tgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatattctatgtggtgccttagtggcggg 198  Q
    |||||| ||||||||| ||||||||||| | | || |||||| |||||| |||||  |||||||||| ||||||||||| ||||||||    
T  242931 tgcctttgtgacgggtaaatatcatattgcattgttgtgccttagtggcaggttactattatattctgtgtggtgccttcgtggcggg 242844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 9185 - 9281
Alignment:
Q  110 ttgccttagtgacgggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctatgtggtgccttagtggcgggttttagt 205  Q
    ||||||||||| ||||||||||  ||||||||| ||||||||| ||||||||| ||  || ||||| |  | | |||||||||||||||||||||||    
T  9185 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcgggttttagt 9281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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