View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_107 (Length: 277)
Name: NF1358_high_107
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_107 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 23582832 - 23582950
Alignment:
| Q |
149 |
tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23582832 |
tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca |
23582931 |
T |
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| Q |
249 |
catctcttgcatgttcatc |
267 |
Q |
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||||||||||||||||||| |
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| T |
23582932 |
catctcttgcatgttcatc |
23582950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 23586715 - 23586833
Alignment:
| Q |
149 |
tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586715 |
tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca |
23586814 |
T |
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| Q |
249 |
catctcttgcatgttcatc |
267 |
Q |
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||||||||||||||||||| |
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| T |
23586815 |
catctcttgcatgttcatc |
23586833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 23586596 - 23586642
Alignment:
| Q |
30 |
actactactaaaaaggtttgtactacagacaatttccattctacaat |
76 |
Q |
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| T |
23586596 |
actactactaaaaaggtttgtactacagacaatttccattctacaat |
23586642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 23391074 - 23391176
Alignment:
| Q |
168 |
atcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgttc |
264 |
Q |
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|||||||||||||| ||| ||||| || ||| |||| |||||| |||||||||||||||||||||| |||||||| ||| ||| |||| |||||||| |
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| T |
23391074 |
atcttgaaagtcttgaacatgaatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttc |
23391173 |
T |
|
| Q |
265 |
atc |
267 |
Q |
| |
|
||| |
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|
| T |
23391174 |
atc |
23391176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 23251621 - 23251743
Alignment:
| Q |
149 |
tccatagtgatacttcctcatcttgaaagtcttc---attaatatattgatact---cataataccccaagctatgtgtaggagacattagcgccatatt |
242 |
Q |
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|
||||||||||||| || |||||||||||||||| || ||||| || ||||| ||| |||||| |||||||||||||| |||||||| |||||||| |
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| T |
23251621 |
tccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatatt |
23251720 |
T |
|
| Q |
243 |
actccacatctcttgcatgttca |
265 |
Q |
| |
|
||||||| |||| |||| |||| |
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| T |
23251721 |
cctccacaactctggcatattca |
23251743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 23247209 - 23247328
Alignment:
| Q |
149 |
tccatagtgatacttcctcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattact |
245 |
Q |
| |
|
||||||||||||| || ||||||||||| |||| ||| ||||| | |||||||| |||| | |||||||||||||| ||||| | ||||||||| || |
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| T |
23247209 |
tccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcct |
23247308 |
T |
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| Q |
246 |
ccacatctcttgcatgttca |
265 |
Q |
| |
|
||||| |||| |||| |||| |
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|
| T |
23247309 |
ccacaactctggcatattca |
23247328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 23283296 - 23283337
Alignment:
| Q |
214 |
ctatgtgtaggagacattagcgccatattactccacatctct |
255 |
Q |
| |
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||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
23283296 |
ctatgtgtaggggacattaacgccatattcctccacatctct |
23283337 |
T |
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