View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_108 (Length: 273)
Name: NF1358_high_108
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_108 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6516924 - 6517196
Alignment:
| Q |
1 |
gaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcattttgtatgattttgctacaaattatcac |
100 |
Q |
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| T |
6516924 |
gaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttggtatgattttgctacaaattatcac |
6517023 |
T |
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| Q |
101 |
tgcaaagcctccaatgggtttgtctcatttagttgaagaagctataaagaaaagaaacttcatgaacgtgcttgatccaaatgtaccaagttgtcctgtt |
200 |
Q |
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| T |
6517024 |
tgcaaagcctccaatgggtttatctcatatagttgaagaagctataaaaaaaggaaacttcatgaacgtgcttgatccaaatgtaccaaattgtcctgtt |
6517123 |
T |
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| Q |
201 |
gaagaggctttggcatgtgctaagctggctttaaagtgtactgagtatagaaaacgtgatagacctgatcttg |
273 |
Q |
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| T |
6517124 |
gaagaggctttggcatgtgctaagctggctttaaagtgtattgagtatagaaaacgtgatagacctgatcttg |
6517196 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 42674073 - 42674191
Alignment:
| Q |
1 |
gaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcattttgtatgattttgctacaaattatcac |
100 |
Q |
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| T |
42674073 |
gaacatttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcattaggtgttatgcttctacaaatcattac |
42674172 |
T |
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| Q |
101 |
tgcaaagcctccaatgggt |
119 |
Q |
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| T |
42674173 |
tggaaagactccaatgggt |
42674191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 50439381 - 50439260
Alignment:
| Q |
1 |
gaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcattttgtatgattttgctacaaattatcac |
100 |
Q |
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||||||| || || || |||||||||||||| ||||| ||| | || ||||||||||||||| ||| |||| || | || ||||| || |||||| | || |
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| T |
50439381 |
gaacattctgttatatagatcctgagtatcagcaaacaggaatgttaggtgtgaaatcagatgtatattcacttggaatcattttccttcaaattttgac |
50439282 |
T |
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| Q |
101 |
tgcaaagcctccaatgggtttg |
122 |
Q |
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||||| | |||||||||||| |
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| T |
50439281 |
agcaaaatcaccaatgggtttg |
50439260 |
T |
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