View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_11 (Length: 617)

Name: NF1358_high_11
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_11
NF1358_high_11
[»] chr8 (1 HSPs)
chr8 (29-589)||(42947706-42948264)
[»] chr5 (2 HSPs)
chr5 (561-605)||(35641797-35641841)
chr5 (483-528)||(32110661-32110706)
[»] chr6 (4 HSPs)
chr6 (544-605)||(16434554-16434615)
chr6 (538-605)||(33973514-33973581)
chr6 (560-605)||(34500900-34500945)
chr6 (558-605)||(19788602-19788650)
[»] chr1 (4 HSPs)
chr1 (544-605)||(22328150-22328211)
chr1 (544-605)||(50295932-50295993)
chr1 (561-605)||(6017445-6017489)
chr1 (561-605)||(8251145-8251189)
[»] chr4 (2 HSPs)
chr4 (561-605)||(14958188-14958232)
chr4 (561-605)||(48380501-48380545)
[»] chr2 (2 HSPs)
chr2 (538-605)||(27667963-27668030)
chr2 (561-598)||(5030312-5030349)
[»] chr3 (2 HSPs)
chr3 (483-541)||(3804470-3804528)
chr3 (561-605)||(34555179-34555223)


Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 29 - 589
Target Start/End: Original strand, 42947706 - 42948264
Alignment:
Q  29 aggtccaatcattaatcatgacatgattgagctgagtttttcatccacaaaaatgaatgcaactcaaaatattgggttagatatctcgaattgaaccaaa 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  42947706 aggtccaatcattaataatgacatgattgagctgagtttttcatccacaaaaatgaatgcaactcaaaatattgggttagatatc--gaattgaaccaaa 42947803  T
Q  129 ggcaagttgcatgagcatatgcataaataaatacataaagtacgacctctagctctagttttcgttttcaccttgatagcttgtcatgtttgatagcgta 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42947804 ggcaagttgtatgagcatatgcataaataaatacataaagtacgacctctagctctagttttcgttttcaccttgatagcttgtcatgtttgatagcgta 42947903  T
Q  229 tctattgcaagatctcgtaatctcatctcttatcgaatcaagcttaacttatttgtgtgttgcatgagatgctagctatgcggtattaatggcatttggc 328  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42947904 tctattgcaagatctcgtaatctcatctcttattgaatcaagcttaacttatttgtgtgttgcatgagatgctagctatgtggtattaatggcatttggc 42948003  T
Q  329 cccatattgagcctctgttgattgtggtttattccagttttatactttcgagctgcagattagaaaggggaccaacaatgtgtgatatatattatggata 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42948004 cccatattgagcctctgttgattgtggtttattccagttttatactttcgagctgcagattagaaaggggaccaacaatgtgtgatatatattatggata 42948103  T
Q  429 catgtgatatttgtgtggagtataagtacgttcatagtactggtcggcgaatagtttgaaaatgtacacttttgatctgatgtactttgaccgtattttt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42948104 catgtgatatttgtgtggagtataagtacgttcatagtactggtcggcgaatagtttgaaaatgtacacttttgacctgatgtactttgaccgtattttt 42948203  T
Q  529 ataccacttcctctatcccatattagactacttgtttgacaatgtgcatttttgatctgac 589  Q
    |||||||||  ||| || |||||||||  ||||||||||||||||||||||||||||||||    
T  42948204 ataccactttttctgtctcatattagatgacttgtttgacaatgtgcatttttgatctgac 42948264  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 35641797 - 35641841
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35641797 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 35641841  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 32110706 - 32110661
Alignment:
Q  483 tttgaaaatgtacacttttgatctgatgtactttgaccgtattttt 528  Q
    ||||||||||| || ||||||||| || ||||||||||||||||||    
T  32110706 tttgaaaatgtgcaattttgatctaatttactttgaccgtattttt 32110661  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 16434554 - 16434615
Alignment:
Q  544 tcccatattagactacttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||  | ||||||| |||| |||| ||||||||||||||||||||||||||||    
T  16434554 tcccatattagatgatttgtttggcaatttgcacttttgatctgacatactttgaccatatt 16434615  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 605
Target Start/End: Original strand, 33973514 - 33973581
Alignment:
Q  538 cctctatcccatattagactacttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||||||||  |  | |||||||||||||| ||||||||||||||| | ||||||||||    
T  33973514 cctctatcccatattagatgatatatttgacaatgtgcacttttgatctgacatattatgaccatatt 33973581  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 605
Target Start/End: Original strand, 34500900 - 34500945
Alignment:
Q  560 ttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||    
T  34500900 ttgtttgacaatgtgcacttttgacctgacatactttgatcatatt 34500945  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 605
Target Start/End: Original strand, 19788602 - 19788650
Alignment:
Q  558 acttgtttgacaa-tgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||| |||||| |||||| |||||||||||| ||||||||    
T  19788602 acttgtttgacaaatgtgcacttttgacctgacatactttaaccatatt 19788650  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 22328211 - 22328150
Alignment:
Q  544 tcccatattagactacttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||  |||| |||||||||||||| | |||| |||||||||||||||||||||    
T  22328211 tcccatattagatgacttatttgacaatgtgcactattgacctgacatactttgaccatatt 22328150  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 50295993 - 50295932
Alignment:
Q  544 tcccatattagactacttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    |||| |||||||  || ||||||||||| ||||||||||| ||||||||||||| |||||||    
T  50295993 tcccttattagaagacatgtttgacaatttgcatttttgacctgacatactttgcccatatt 50295932  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 6017489 - 6017445
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||    
T  6017489 tgtttgaaaatgtgcaattttgatctaacttactttgaccatatt 6017445  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 8251189 - 8251145
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||    
T  8251189 tgtttgaaaatgtgcaattttgatctaacttactttgaccatatt 8251145  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 14958232 - 14958188
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||||||||||||||||||||| || ||||||||||||||||    
T  14958232 tgtttgacaatgtgcatttttgatccgatatactttgaccatatt 14958188  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 48380501 - 48380545
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||| ||||||||||||||| || || |||||||||||||||    
T  48380501 tgtttgaaaatgtgcatttttgacctaacttactttgaccatatt 48380545  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 605
Target Start/End: Original strand, 27667963 - 27668030
Alignment:
Q  538 cctctatcccatattagactacttgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    |||| ||||| |||||||  |||||||||||||| || | ||||||  ||||||||||||||||||||    
T  27667963 cctccatcccttattagatgacttgtttgacaatttgtaattttgacttgacatactttgaccatatt 27668030  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 598
Target Start/End: Original strand, 5030312 - 5030349
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttga 598  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  5030312 tgtttgacaatgtacctttttgatctgacatactttga 5030349  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 541
Target Start/End: Original strand, 3804470 - 3804528
Alignment:
Q  483 tttgaaaatgtacacttttgatctgatgtactttgaccgtatttttataccacttcctc 541  Q
    |||||||||||||| ||||||||| || |||||||| | ||||||| ||| ||||||||    
T  3804470 tttgaaaatgtacaattttgatctaatttactttgatcatatttttctactacttcctc 3804528  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 34555179 - 34555223
Alignment:
Q  561 tgtttgacaatgtgcatttttgatctgacatactttgaccatatt 605  Q
    ||||||| ||||||||||||||| || || |||||||||||||||    
T  34555179 tgtttgaaaatgtgcatttttgacctaacttactttgaccatatt 34555223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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