View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_111 (Length: 272)
Name: NF1358_high_111
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_111 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 2429965 - 2430198
Alignment:
| Q |
30 |
tcagcctcgcttgtgtccttnnnnnnnggtaaatatagatgtttttgttagtattttttaagtcttaaggtcttctctactttgaaatggaacatcatcc |
129 |
Q |
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| T |
2429965 |
tcagcctcgcttgtatccttaaaaaaaggtaaatatagatgtttttgttagtgttttttaaatcttaaggtcttctctgctttgaaatgggacatcatcc |
2430064 |
T |
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| Q |
130 |
ttccatcctagttttttctcattnnnnnnnnnntttccatgaacttatgatcaattatgcttacttacatctcataaaaattaattctaacaaaatgaag |
229 |
Q |
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| T |
2430065 |
ttccatcctagttttttctcattaaaaaaaaaaattccatgaacttatgatcaattatgcttacttacatctcataaaaattaattctaacaaaatgaag |
2430164 |
T |
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| Q |
230 |
aatgggaaaggtagaatattttccgcccctatga |
263 |
Q |
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|||| |||||||||| ||||||||| |||||||| |
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| T |
2430165 |
aatgagaaaggtagactattttccgtccctatga |
2430198 |
T |
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