View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_112 (Length: 271)
Name: NF1358_high_112
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_112 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 36083823 - 36084000
Alignment:
| Q |
50 |
gcatggcttctcaaacatcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaatnnnnnnnncttatagggcgcatggcttctcaaaca |
149 |
Q |
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| T |
36083823 |
gcatggcttctcaaacatcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaataaaagaa-cttatagggcgcatggcttctcaaaca |
36083921 |
T |
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| Q |
150 |
tttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgat |
228 |
Q |
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| T |
36083922 |
tttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgat |
36084000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 36069633 - 36069725
Alignment:
| Q |
134 |
catggcttctcaaacatttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgat |
228 |
Q |
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| T |
36069633 |
catggcttctcaaacattttt-tattgtttgaggcaaaaacttctcaaacatcttaaa-aagattcatatacataaaacttttaaatgtgatgat |
36069725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 36083760 - 36083807
Alignment:
| Q |
67 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaat |
114 |
Q |
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| T |
36083760 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagcagtaat |
36083807 |
T |
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