View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_117 (Length: 263)
Name: NF1358_high_117
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_117 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 2930942 - 2930696
Alignment:
| Q |
17 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
116 |
Q |
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| T |
2930942 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
2930843 |
T |
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| Q |
117 |
aagtccaatatagccacaatctccagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttatt |
216 |
Q |
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| T |
2930842 |
aagtccaatatagccacaatttccagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttatt |
2930743 |
T |
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| Q |
217 |
gtttctataccatgatagtttgttgcaccaccaataccaacacaact |
263 |
Q |
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| T |
2930742 |
gtttctataccatgatagtttgttgcaccaccaataccaacacaact |
2930696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 2917354 - 2917108
Alignment:
| Q |
17 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
116 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917354 |
acaaagcactatttccattagcatcaacaaatacaacagaataagcatcaactgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
2917255 |
T |
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| Q |
117 |
aagtccaatatagccacaatctccagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttatt |
216 |
Q |
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| T |
2917254 |
aagtccaatataaccacaatcaccagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttatt |
2917155 |
T |
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| Q |
217 |
gtttctataccatgatagtttgttgcaccaccaataccaacacaact |
263 |
Q |
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| T |
2917154 |
gtttctataccatgatagtttgttgcaccaccaataccaacacaact |
2917108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 24555310 - 24555087
Alignment:
| Q |
40 |
tcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttgaagtccaatatagccacaatctc |
139 |
Q |
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| T |
24555310 |
tcaacaaatacaacagaataagcattaattgcagtcaaaatcaaacgtgatccaccttcaccagaattaaactcttgtaatccaagataagcacaatcac |
24555211 |
T |
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| Q |
140 |
cagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttattgtttctataccatgatagtttgt |
239 |
Q |
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| T |
24555210 |
ctgttgtatccaaacaaaatccaaccctataagcattaccagatccatgtttcaaaattaaaaattttccactaattaattctacaccaggatagtttgc |
24555111 |
T |
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| Q |
240 |
tgcaccaccaataccaacacaact |
263 |
Q |
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| T |
24555110 |
aggaccaccaataccaacaaaact |
24555087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 24567019 - 24566869
Alignment:
| Q |
40 |
tcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttgaagtccaatatagccacaatctc |
139 |
Q |
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|||||||| | |||||||||| ||||| | |||| |||| |||||||| |||||| ||||| |||||||| | || | | ||||| | |||||||||| |
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| T |
24567019 |
tcaacaaaaacaacagaataagcatcattcacagtaaaaatcaaacgtggtccaccatcttcggaattgaaaaattccaatgcaataaaaccacaatctc |
24566920 |
T |
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| Q |
140 |
cagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtt |
190 |
Q |
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| T |
24566919 |
cagttgtatccaaacaaaatccaatcctataagcatgaccagatccatgtt |
24566869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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