View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_121 (Length: 254)
Name: NF1358_high_121
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_121 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 7035842 - 7035638
Alignment:
| Q |
33 |
ataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtctaaaaaatg |
132 |
Q |
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| T |
7035842 |
ataattttttattccacgtaggtgttttatatatctcccgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtctaaaaaatg |
7035743 |
T |
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| Q |
133 |
tgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctgtttgtttgaaggctatttcatt |
232 |
Q |
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| T |
7035742 |
tgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctg----tttgaaggctatttcatt |
7035647 |
T |
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| Q |
233 |
ctacctttg |
241 |
Q |
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||||||||| |
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| T |
7035646 |
ctacctttg |
7035638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 7897082 - 7896882
Alignment:
| Q |
33 |
ataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtctaaaaaatg |
132 |
Q |
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||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| || |
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| T |
7897082 |
ataattttttattctacgtaggtttttg---tatctcccgaagtgttggagacactgaagcagcaacaaaaggttaatattctcccttgtctaaaaa-tg |
7896987 |
T |
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| Q |
133 |
tgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctgtttgtttgaaggctatttcatt |
232 |
Q |
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| T |
7896986 |
tgtgtatctcaattatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctg----tttgaaggctatttcatt |
7896891 |
T |
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| Q |
233 |
ctacctttg |
241 |
Q |
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| T |
7896890 |
ctacctttg |
7896882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 7039336 - 7039219
Alignment:
| Q |
102 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttag----ctatcaattgcaa-ttgaattt-cttactattggattctt |
195 |
Q |
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|||||| ||| ||||||||||| |||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||| |||||||| |
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| T |
7039336 |
aaggtttatcctctcccttgtcctaaaaatat-tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattctt |
7039238 |
T |
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| Q |
196 |
aaccgaa-agaggctgttt |
213 |
Q |
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||||||| ||||||||||| |
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| T |
7039237 |
aaccgaacagaggctgttt |
7039219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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