View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_13 (Length: 597)
Name: NF1358_high_13
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 587
Target Start/End: Complemental strand, 12368013 - 12367446
Alignment:
| Q |
30 |
gttaacacccccatgattaacgcacatcaaccaatacaagcccaagattcaaatatagaggaaaaggaaaagaagatnnnnnnnnnnnnnnnnnntatca |
129 |
Q |
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| T |
12368013 |
gttaacacccccatgattaacgcacatcaaccaatacaagcccaagattcaaatatagaggaaaaggaatagaagataaaaaaacaatata----tatga |
12367918 |
T |
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| Q |
130 |
catatagtttgcaaactagaaaaactagacctataaaatgtgatttgtcattccttatttttaataaatttggttattaactctatatattgtctgcaat |
229 |
Q |
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| T |
12367917 |
catatagtttgcaaactagaaaaactagacctataaaatgtgatttgtcattccttatttttaataaatttggttattaactctatatattttctgcaat |
12367818 |
T |
|
| Q |
230 |
atatatactatcaatgacaacatggtgataatatgaaaatggagaggaacttgctgcatcaagagaaatattggttagatacatattatactagaaaaat |
329 |
Q |
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| T |
12367817 |
atatatactatcaatgacaacatggtgataatatgaaaatggagaggaacttgctgcatcaagagaaatattggttagatacatat--tactagaaaaat |
12367720 |
T |
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| Q |
330 |
taaagttaaaatgacgacagaaatt------------------aaattattcactaaattgacgtctctaatacgttgcgatgaaattagagacaaagtt |
411 |
Q |
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| T |
12367719 |
taaagttaaaatgacgacagaaattaaattaaaaaaaaaaaaaaaattattcactaaattgacgtctctaatactttgcgatgaaattagagac--agtt |
12367622 |
T |
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| Q |
412 |
ttcattttctatctctatttatatggctgttactatttcaactatttcnnnnnnnnnggtagatctatttcaactatttctaatatttaatatacataaa |
511 |
Q |
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| T |
12367621 |
ttcattttctatctctatttatatggctgttactatttcaactattttttttttttttgtagatctatttcaagtatttctaatagttaatatacataaa |
12367522 |
T |
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| Q |
512 |
tatttcggttatcatgttataggtacgaaatttctaccgccgtttagagcgaaaaatttccaatatagtatctgtg |
587 |
Q |
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| T |
12367521 |
tatttgggttatcatgttagaggtacgaaatttctaccgccgtttagagcgacaaatttccaatatagtatctgtg |
12367446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 33731695 - 33731655
Alignment:
| Q |
517 |
cggttatcatgttataggtacgaaatttctaccgccgttta |
557 |
Q |
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| T |
33731695 |
cggttatcatgttattggtacgaagtttcaaccgccgttta |
33731655 |
T |
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