View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_130 (Length: 228)
Name: NF1358_high_130
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_130 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0062 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 29646124 - 29645902
Alignment:
| Q |
6 |
aatatttgatcaaaaaatgaagatatggcatgttttaaatgaaaattttaataaaattttcttacaatatcatcaatattgatannnnnnnaatcatcat |
105 |
Q |
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| T |
29646124 |
aatatttgatcaaaaaatgaagatatggcatgttttaaatgaaaattttaataaaattatcttacaataacatcaatattgatatttttttaatcatcat |
29646025 |
T |
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| Q |
106 |
atcatatatcacatcatttaaaacatgttgtattactattatttagttcaacaatactaagtagtggctaatagagaccaaatcatcaaaattttgaaga |
205 |
Q |
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|||||||||||||||||||||||||| | |||||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29646024 |
atcatatatcacatcatttaaaacatatcgtattattattgtttagttcaacaatacgaagtagtggctattagagaccaaatcatcaaaattttgaaga |
29645925 |
T |
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| Q |
206 |
tgataggatcaaaactacaatta |
228 |
Q |
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| T |
29645924 |
tgataggatcaaaactacaatta |
29645902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 24264062 - 24264112
Alignment:
| Q |
38 |
ttttaaatgaaaattttaataaaattttcttacaatatcatcaatattgat |
88 |
Q |
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| T |
24264062 |
ttttaaatgaaatttgtaagaaaattttcttacgatttcatcaatattgat |
24264112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 20335 - 20388
Alignment:
| Q |
35 |
atgttttaaatgaaaattttaataaaattttcttacaatatcatcaatattgat |
88 |
Q |
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| T |
20335 |
atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttgat |
20388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 30503 - 30556
Alignment:
| Q |
35 |
atgttttaaatgaaaattttaataaaattttcttacaatatcatcaatattgat |
88 |
Q |
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||||||||||||||| ||| ||| ||||||| ||||||| |||||||| ||||| |
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| T |
30503 |
atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttgat |
30556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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