View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_21 (Length: 529)
Name: NF1358_high_21
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_21 |
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| [»] scaffold0177 (2 HSPs) |
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| [»] scaffold0585 (1 HSPs) |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 125 - 432
Target Start/End: Complemental strand, 28691292 - 28690985
Alignment:
| Q |
125 |
ccatgatccctttgaagttaatgtaatcttcctcggaagaattgtgattgttatccaaaatgagctcagaaagttgtggaacataatgtcctgaaatttc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28691292 |
ccatgatccctttgaagttaatgtaatcttcctcggaagaattgtgattgttatccaaaatgagctcagaaagttgtggaacataatgtcctgaaatttc |
28691193 |
T |
|
| Q |
225 |
aatacaaacccaaattaatttaaagttaggaacttagtatctattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28691192 |
aatacaaacccaaattaatttaaagttaggaacttagtatttattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaa |
28691093 |
T |
|
| Q |
325 |
tcatgtgatttaaattgaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcac |
424 |
Q |
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| T |
28691092 |
tcatgtgatttgaattgaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcac |
28690993 |
T |
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| Q |
425 |
attaagtg |
432 |
Q |
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|||||||| |
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| T |
28690992 |
attaagtg |
28690985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21865 - 21796
Alignment:
| Q |
1 |
ctttggtgaccaaaatttatcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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| T |
21865 |
ctttggtgaccaaaatttatcctaccttctttggcttggattcttgccaaatgcctaatatagttcattc |
21796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22946 - 22877
Alignment:
| Q |
1 |
ctttggtgaccaaaatttatcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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| T |
22946 |
ctttggtgaccaaaatttatcctaccttttttggcttggattcttgtcaaatgcctaatatagttcattc |
22877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2941136 - 2941067
Alignment:
| Q |
1 |
ctttggtgaccaaaatttatcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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| T |
2941136 |
ctttggtgaccaaaatttatcctaccttttttggattggattcttaccaaatgcctaatatagttcattc |
2941067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1681 - 1611
Alignment:
| Q |
1 |
ctttggtgaccaaaattta-tcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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| T |
1681 |
ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattc |
1611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40589734 - 40589665
Alignment:
| Q |
1 |
ctttggtgaccaaaattta-tcctaactttttaggctaagattctggccaaatgcctaaaatagttcatt |
69 |
Q |
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||||||||||||||||||| ||| |||||||| || | |||||| ||||||||||||| |||||||||| |
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| T |
40589734 |
ctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcatt |
40589665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 27901606 - 27901545
Alignment:
| Q |
9 |
accaaaatttatcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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|||||||||||||||| |||||| |||| |||||| ||||||| ||||| ||||||||||| |
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| T |
27901606 |
accaaaatttatcctaccttttttggcttggattcttgccaaattcctaatatagttcattc |
27901545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 61 - 131
Alignment:
| Q |
1 |
ctttggtgaccaaaattta-tcctaactttttaggctaagattctggccaaatgcctaaaatagttcattc |
70 |
Q |
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||||||||||||||||||| ||| |||||||| || | |||||| ||| ||||||||| ||||||||||| |
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| T |
61 |
ctttggtgaccaaaatttaatccgaacttttttggtttggattcttgcctaatgcctaatatagttcattc |
131 |
T |
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