View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_22 (Length: 522)

Name: NF1358_high_22
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_22
NF1358_high_22
[»] chr4 (4 HSPs)
chr4 (71-344)||(33813631-33813909)
chr4 (366-511)||(33813490-33813634)
chr4 (271-386)||(40841204-40841318)
chr4 (90-182)||(33809671-33809760)
[»] chr5 (2 HSPs)
chr5 (271-401)||(12024420-12024550)
chr5 (461-511)||(11736288-11736338)
[»] chr1 (1 HSPs)
chr1 (271-401)||(34988478-34988607)
[»] chr7 (1 HSPs)
chr7 (271-398)||(43895393-43895520)
[»] chr8 (1 HSPs)
chr8 (457-510)||(42944234-42944287)
[»] chr3 (3 HSPs)
chr3 (457-509)||(25986604-25986656)
chr3 (458-510)||(54158650-54158702)
chr3 (462-510)||(48192825-48192873)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 71 - 344
Target Start/End: Complemental strand, 33813909 - 33813631
Alignment:
Q  71 atatattctgtttgatgcttgaaaatgtttgtctgatatgctcaccagtatatcaagctttgtcacttaattggagacctacttcagttccaatttacc- 169  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||      
T  33813909 atatattctgtttgatgcttgaaaatgtttgtctgatatgatcaccagtatattaagctttgtcacttaattagagacctacttcagttccaatttacag 33813810  T
Q  170 ----tcatatttttgtcttaaatcagcctataatccaacaagttaagttgcttttcgtagatgatatttctttggtatctatgcaattaattagtacatt 265  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33813809 tacttcatatttttgtcttaaatcagcctataatccaacaagttaagttgcttttcgtagatgatatttctttggtatctatgcaattaattagtacatt 33813710  T
Q  266 ttgtgggatatggatttgatgttgtgaagtacaacacagtttttatttcagctattggatggtttgataaaattacaat 344  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33813709 ttgtgggatatggatttggtgctgtaaagtacaacacagtttttatttcagctattggatggtttgataaaattacaat 33813631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 366 - 511
Target Start/End: Complemental strand, 33813634 - 33813490
Alignment:
Q  366 caatggtcacaaatcaaaactatgtgaaactgtgtggcagcatatcctggtccccattttgaannnnnnnctgcccctattaccnnnnnnnttgatatgt 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||       |||||||||    
T  33813634 caatggtcacaaatcaaaactatgtgaaactgtgtggcagcatatcctggtccc-attttgaatttttttctgcccctattaccaaaaaaattgatatgt 33813536  T
Q  466 ctgcccctagtttaaaattattgatagaaatgcccctgttcttcat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33813535 ctgcccctagtttaaaattattgatagaaatgcccctgttcttcat 33813490  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 386
Target Start/End: Complemental strand, 40841318 - 40841204
Alignment:
Q  271 ggatatggattt-gatgttgtgaagtacaacacagtttttatttcagctattggatggtttgataaaattacaatagtactgtgccaataaagatccaat 369  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||||||| ||| |||||||||||||||||| |||| |||   | |||||||||| ||||    
T  40841318 ggatatggattttgatgctgtaaagtataacacagtttttatttcagc-attagatggtttgataaaattataataatac-cagtcaataaagattcaat 40841221  T
Q  370 ggtcacaaatcaaaact 386  Q
    ||||| || ||||||||    
T  40841220 ggtcataattcaaaact 40841204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 33809760 - 33809671
Alignment:
Q  90 tgaaaatgtttgtctgatatgctcaccagtatatcaagctttgtcacttaattggagacctacttcagttccaatttacctcatatttttgtc 182  Q
    ||||||| ||||||||||||   || ||| |||||||||| | ||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  33809760 tgaaaatatttgtctgatat---cagcagaatatcaagctctatcagttaattagagatctacttgagttccaatttacctcatatttttgtc 33809671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 12024420 - 12024550
Alignment:
Q  271 ggatatggatttgatgttgtgaagtacaacacagtttttatttcagctattggatggtttgataaaattacaatagtactgtgccaataaagatccaatg 370  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||   |||||||||||||||||||    
T  12024420 ggatatggatttggtgttgtaaagtacaacacagttttcatttcagccattggatgatttgataatattacaatagtatcatgccaataaagatccaatg 12024519  T
Q  371 gtcacaaatcaaaactatgtgaaactgtgtg 401  Q
    ||||||| | |||||  ||||||||||||||    
T  12024520 gtcacaatttaaaacagtgtgaaactgtgtg 12024550  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 11736338 - 11736288
Alignment:
Q  461 tatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttcat 511  Q
    ||||||||||||||||| ||||||||||||| || ||||| | ||||||||    
T  11736338 tatgtctgcccctagttcaaaattattgatacaattgccctttttcttcat 11736288  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 34988607 - 34988478
Alignment:
Q  271 ggatatggatttgatgttgtgaagtacaacacagtttttatttcagctattggatggtttgataaaattacaatagtactgtgccaataaagatccaatg 370  Q
    ||||||||||||| || ||| ||||||||||||||||  ||| |||| ||||||||||||||||| | || |||||| |  |||||||||||||||||||    
T  34988607 ggatatggatttggtgctgtaaagtacaacacagtttcaatt-cagccattggatggtttgataatactataatagtcccatgccaataaagatccaatg 34988509  T
Q  371 gtcacaaatcaaaactatgtgaaactgtgtg 401  Q
    ||||||| |||||||| ||||||||||||||    
T  34988508 gtcacaattcaaaactttgtgaaactgtgtg 34988478  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 43895520 - 43895393
Alignment:
Q  271 ggatatggatttgatgttgtgaagtacaacacagtttttatttcagctattggatggtttgataaaattacaatagtactgtgccaataaagatccaatg 370  Q
    ||||||||||||| || ||| ||||||||||||||||| |||||||| | ||||||||||||| | |||| ||||||||  | |||||||| |||||||     
T  43895520 ggatatggatttggtgctgtaaagtacaacacagttttcatttcagccagtggatggtttgatgatattataatagtaccataccaataaaaatccaata 43895421  T
Q  371 gtcacaaatcaaaactatgtgaaactgt 398  Q
    |||| || |||||||| |||||||||||    
T  43895420 gtcataattcaaaactgtgtgaaactgt 43895393  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 42944287 - 42944234
Alignment:
Q  457 ttgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttca 510  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  42944287 ttgatatgtctgcccctagttgaaaactattgatacaaatgcccctgttcttca 42944234  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 25986604 - 25986656
Alignment:
Q  457 ttgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttc 509  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  25986604 ttgatatgtctgcccctagttgaaaattattgatacaattgcccctgttcttc 25986656  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 54158702 - 54158650
Alignment:
Q  458 tgatatgtctgcccctagtttaaaattattgatagaaatgcccctgttcttca 510  Q
    ||||||||||||||||| || |||||||||| || |||||||| |||||||||    
T  54158702 tgatatgtctgcccctatttcaaaattattgttaaaaatgcccttgttcttca 54158650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 48192825 - 48192873
Alignment:
Q  462 atgtctgcccctagtttaaaattattgatagaaatgcccctgttcttca 510  Q
    ||||||||| |||||| ||||||||||||| ||||| ||||||| ||||    
T  48192825 atgtctgccactagttcaaaattattgataaaaatgtccctgttgttca 48192873  T

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