View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_27 (Length: 503)

Name: NF1358_high_27
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_27
NF1358_high_27
[»] chr4 (1 HSPs)
chr4 (30-497)||(27692501-27692968)
[»] chr1 (32 HSPs)
chr1 (151-246)||(8956225-8956320)
chr1 (306-450)||(9464469-9464613)
chr1 (312-450)||(8921053-8921191)
chr1 (151-213)||(8942219-8942281)
chr1 (134-188)||(11028478-11028532)
chr1 (151-260)||(8932303-8932412)
chr1 (310-450)||(8942372-8942512)
chr1 (310-450)||(8964867-8965007)
chr1 (310-450)||(9104606-9104746)
chr1 (314-450)||(9488909-9489045)
chr1 (134-188)||(11011075-11011129)
chr1 (151-260)||(8920898-8921007)
chr1 (389-450)||(9233674-9233735)
chr1 (32-81)||(9350302-9350351)
chr1 (149-213)||(9233905-9233969)
chr1 (152-188)||(10903629-10903665)
chr1 (323-430)||(8873703-8873810)
chr1 (312-450)||(8932458-8932596)
chr1 (371-449)||(8956439-8956517)
chr1 (146-216)||(9320099-9320169)
chr1 (146-216)||(9350416-9350486)
chr1 (134-188)||(10914774-10914828)
chr1 (134-188)||(10979509-10979563)
chr1 (134-188)||(11004893-11004947)
chr1 (119-156)||(9056731-9056768)
chr1 (119-188)||(9142742-9142811)
chr1 (32-81)||(9318268-9318317)
chr1 (32-81)||(9319985-9320034)
chr1 (143-188)||(11033375-11033420)
chr1 (310-450)||(9320257-9320397)
chr1 (32-80)||(9453803-9453851)
chr1 (141-213)||(9486035-9486107)
[»] chr3 (1 HSPs)
chr3 (32-213)||(9159675-9159856)
[»] chr6 (1 HSPs)
chr6 (38-90)||(15927165-15927217)


Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Original strand, 27692501 - 27692968
Alignment:
Q  30 ataacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagtcaga 129  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692501 ataacaactcaggagccatgtaccccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagtcaga 27692600  T
Q  130 tatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattcca 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692601 tatctttgggtcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattcca 27692700  T
Q  230 cgggaaattccaagagaaatgtcgtaaattttctcatagcttaacgacgacaagtgtccttgctcttgtgaaaacgtgtgtttatcaagagaaccattag 329  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  27692701 cgggaaattccaagagaaatgtcgtagattttctcgtagcttaacgacgacaagtgtccttgctcatgtgaaaacatgtgtttatcaagagaaccattag 27692800  T
Q  330 gcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttgcaacttc 429  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27692801 gcatgaactcgtaaaccagagcttgctttgttctttcagcacagaatccaaccagttgcaccacgttcacatgacgaattcttccaatggttgcaacttc 27692900  T
Q  430 attgatgaagtcttgtccattggtttgagacttattcaataccttaacagctactttgcctttgcttc 497  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||    
T  27692901 attgatgaagtcttgtccattggtttgagacttggtcaataccttaacagctactttgtgtttgcttc 27692968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 8956225 - 8956320
Alignment:
Q  151 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagaga 246  Q
    ||||||||||||||||||||| || |||||||| ||||  ||||||||||||||||||||||| || ||   ||||||||| | || |||||||||    
T  8956225 gtcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagaga 8956320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 450
Target Start/End: Original strand, 9464469 - 9464613
Alignment:
Q  306 tgtgtttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacg 405  Q
    ||||||| ||||||||| | |||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || |||||||| |||||  |    
T  9464469 tgtgtttttcaagagaatcgttaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacattaacatggtg 9464568  T
Q  406 aattcttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    |||  |||||||||| ||||||||||||||||| || ||||||||    
T  9464569 aatcgttccaatggtagcaacttcattgatgaattcctgtccatt 9464613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 450
Target Start/End: Original strand, 8921053 - 8921191
Alignment:
Q  312 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 411  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| ||  ||  ||||||||||||| ||| ||||||||||  | ||| | ||| |    
T  8921053 tatcaagagagccatttggcatgaaatcataaacaagagcacgttttgatccctcaacacaaaatccaacaagtcgcaccacattggcgtgatgtatttt 8921152  T
Q  412 tccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    ||| ||||||||||||||||| ||||| ||||| |||||    
T  8921153 tcctatggttgcaacttcattaatgaaatcttgcccatt 8921191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 8942219 - 8942281
Alignment:
Q  151 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 213  Q
    ||||||||| ||||||||||| || |||||||| ||||  |||||||||||||||||||||||    
T  8942219 gtcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatg 8942281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 11028532 - 11028478
Alignment:
Q  134 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  11028532 tttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 11028478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 8932303 - 8932412
Alignment:
Q  151 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 250  Q
    ||||||||| ||||||||||| || ||||| || ||||  ||||||||||||||||||||||| || ||   ||||||||| | || ||||||||| ||     
T  8932303 gtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8932402  T
Q  251 tcgtaaattt 260  Q
    ||||| ||||    
T  8932403 tcgtacattt 8932412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 450
Target Start/End: Original strand, 8942372 - 8942512
Alignment:
Q  310 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 409  Q
    |||||||||||| ||||| |||||||| || ||||| ||||||   |||| ||  ||  ||||||||||||  ||| ||||||||||    ||| | |||    
T  8942372 tttatcaagagagccattgggcatgaaatcataaacaagagctctttttgatccctcaacacaaaatccaataagtcgcaccacattggtgtgatgtatt 8942471  T
Q  410 cttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    ||||| || |||||||||||||||||||| ||||| |||||    
T  8942472 cttcctattgttgcaacttcattgatgaaatcttgcccatt 8942512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 450
Target Start/End: Original strand, 8964867 - 8965007
Alignment:
Q  310 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 409  Q
    ||||||||| || ||||||| |||||| || ||||| |||||  | |||| ||  ||| ||||||| ||||  | |||||||||||||| |||| | ||     
T  8964867 tttatcaagggatccattagacatgaattcataaacaagagcacggtttgatccctcgacacaaaaaccaattaattgcaccacattcaaatgatgtatc 8964966  T
Q  410 cttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    |||||||||||||| |||||||| || ||||| || |||||    
T  8964967 cttccaatggttgctacttcattaataaagtcctgcccatt 8965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 450
Target Start/End: Complemental strand, 9104746 - 9104606
Alignment:
Q  310 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 409  Q
    |||||||||||| |||||||||||||| || ||||| |||||  | |||| ||  ||   |||||||||||  | ||| || ||||||| |||| | ||     
T  9104746 tttatcaagagatccattaggcatgaattcataaacaagagcacgttttgatccctcaatacaaaatccaaataattgtactacattcaaatgatgtatc 9104647  T
Q  410 cttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    |||||||||||||| |||||| | || ||||||||||||||    
T  9104646 cttccaatggttgctacttcactaataaagtcttgtccatt 9104606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 450
Target Start/End: Original strand, 9488909 - 9489045
Alignment:
Q  314 tcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttc 413  Q
    |||||||||||||||||||||||||| ||||| || |||   |||||| | ||  ||||||| ||||  || || ||||| || |||||  ||||  |||    
T  9488909 tcaagagaaccattaggcatgaactcataaacaagtgctctttttgttttctcaacacaaaagccaattaggtgaaccacgttaacatggtgaatcgttc 9489008  T
Q  414 caatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    |||| || ||||||||||||||||| || ||||||||    
T  9489009 caatcgtagcaacttcattgatgaattcctgtccatt 9489045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 11011075 - 11011129
Alignment:
Q  134 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||  ||||| || |||||||||||||||||||| ||||||||||||||||    
T  11011075 tttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 8920898 - 8921007
Alignment:
Q  151 gtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaagtattgaattccacgggaaattccaagagaaatg 250  Q
    ||||||||| ||||||||||| || || ||||| ||||  |||||||||||||| |||||||| || ||   ||||||||| | || ||||||||| ||     
T  8920898 gtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcatgtcacagccttgatgcaaataagcaattccacgtgcaactccaagagatatc 8920997  T
Q  251 tcgtaaattt 260  Q
    ||||| ||||    
T  8920998 tcgtacattt 8921007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 9233735 - 9233674
Alignment:
Q  389 accacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    |||||||| |||||| | |||||||||||||| |||||||| ||||| || |||||||||||    
T  9233735 accacattaacatgatgtattcttccaatggtcgcaacttcgttgataaaatcttgtccatt 9233674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 9350302 - 9350351
Alignment:
Q  32 aacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 81  Q
    ||||||||||||||||| ||||| |||||||||||||| || ||||||||    
T  9350302 aacaactcaggagccatatatccaattgttcctcttgctgcagttaaagt 9350351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 9233969 - 9233905
Alignment:
Q  149 tcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 213  Q
    ||||| |||||||| |||||||| || |||||||| ||||  |||||||| ||||||||||||||    
T  9233969 tcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 9233905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 10903629 - 10903665
Alignment:
Q  152 tcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10903629 tcaagaagaatgttatgaggctttatatcaaagtgta 10903665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 430
Target Start/End: Complemental strand, 8873810 - 8873703
Alignment:
Q  323 ccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttg 422  Q
    ||||||||||| ||||| ||||| |||||  | |||| ||  ||||  ||||||||||  | |||||||||||||| |||| | ||||| ||||||||||    
T  8873810 ccattaggcataaactcataaacaagagcacgttttgatccctcggtgcaaaatccaattaattgcaccacattcaaatgatgtattctcccaatggttg 8873711  T
Q  423 caacttca 430  Q
    | ||||||    
T  8873710 ctacttca 8873703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 450
Target Start/End: Original strand, 8932458 - 8932596
Alignment:
Q  312 tatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaattct 411  Q
    |||||||||| ||||| |||||||| || ||||| |||||  | |||| | | ||  ||||||||||||| ||| ||||||||||    ||| | ||| |    
T  8932458 tatcaagagagccattgggcatgaaatcataaacaagagcacgttttgatttctcaacacaaaatccaacaagtcgcaccacattggtgtgatgtatttt 8932557  T
Q  412 tccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    ||| || |||||||||||| | ||||| |||||||||||    
T  8932558 tcctatagttgcaacttcactaatgaaatcttgtccatt 8932596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 8956439 - 8956517
Alignment:
Q  371 caaaatccaaccagttgcaccacattcacatgacgaattcttccaatggttgcaacttcattgatgaagtcttgtccat 449  Q
    ||||||||||| ||| ||||||||||    ||| | ||| |||| ||||||||||||||||| ||||| ||||||||||    
T  8956439 caaaatccaacaagtcgcaccacattggtgtgatgtatttttcctatggttgcaacttcattaatgaaatcttgtccat 8956517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 9320099 - 9320169
Alignment:
Q  146 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 216  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9320099 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9320169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 9350416 - 9350486
Alignment:
Q  146 ttctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatgtaa 216  Q
    ||||| |||||||| |||||||| || || |||||||| || |  |||||||||||||| |||||||||||    
T  9350416 ttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatgtaa 9350486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 10914774 - 10914828
Alignment:
Q  134 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10914774 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10914828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 10979509 - 10979563
Alignment:
Q  134 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  10979509 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 10979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 11004947 - 11004893
Alignment:
Q  134 tttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  11004947 tttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgta 11004893  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 9056731 - 9056768
Alignment:
Q  119 ccaaagtcagatatctttggatcaaaattctcgtcaag 156  Q
    |||||||||||||||||||||  |||||||||||||||    
T  9056731 ccaaagtcagatatctttggaataaaattctcgtcaag 9056768  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 9142811 - 9142742
Alignment:
Q  119 ccaaagtcagatatctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||||||||||||||||  ||| ||||| ||||| ||||| ||||| || || |||||||| ||||    
T  9142811 ccaaagtcagatatctttggaataaagttctcatcaagcagaatattatggggcttgatatcaaaatgta 9142742  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 9318317 - 9318268
Alignment:
Q  32 aacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 81  Q
    ||||| ||||||||||||||||| ||||||||||| || || ||||||||    
T  9318317 aacaattcaggagccatgtatccaattgttcctctagctgcagttaaagt 9318268  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 9319985 - 9320034
Alignment:
Q  32 aacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagt 81  Q
    ||||| ||||||||||| ||||| |||||||||||||| || ||||||||    
T  9319985 aacaattcaggagccatatatccaattgttcctcttgctgcagttaaagt 9320034  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 11033375 - 11033420
Alignment:
Q  143 aaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 188  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  11033375 aaattctcatcaagaaggatgttatgaggctttatgtcaaagtgta 11033420  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 450
Target Start/End: Original strand, 9320257 - 9320397
Alignment:
Q  310 tttatcaagagaaccattaggcatgaactcgtaaaccagagcttgctttgttctttcggcacaaaatccaaccagttgcaccacattcacatgacgaatt 409  Q
    |||||||||||| ||||| | |||||| || ||||| |||||  |||||| || |||  ||||||| ||||  ||| | ||||||||    ||| | |||    
T  9320257 tttatcaagagagccattggacatgaattcataaacaagagcacgctttgatccttcaacacaaaacccaataagtcgaaccacattggtgtgatgtatt 9320356  T
Q  410 cttccaatggttgcaacttcattgatgaagtcttgtccatt 450  Q
    ||||| |||||||| |||||| | ||||| |||||||||||    
T  9320357 cttcctatggttgcgacttcactaatgaaatcttgtccatt 9320397  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 9453851 - 9453803
Alignment:
Q  32 aacaactcaggagccatgtatcccattgttcctcttgccgctgttaaag 80  Q
    ||||| |||||||||||||| || |||||||||||||| ||||| ||||    
T  9453851 aacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaag 9453803  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 9486107 - 9486035
Alignment:
Q  141 caaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 213  Q
    ||||||| ||||||||||||||||| ||||| || |||||||| || |  ||||||||  |||| ||||||||    
T  9486107 caaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttgcataccacagccttgatg 9486035  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 9159675 - 9159856
Alignment:
Q  32 aacaactcaggagccatgtatcccattgttcctcttgccgctgttaaagttaaaatactttgatctgttcggtacaacttcgccaaaccaaagtcagata 131  Q
    |||||||| |||||||| || || |||||||||||||| || |||||| ||| |||||| |  ||  |  | || | ||| || | |||||||||||| |    
T  9159675 aacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatactattgtcattaggataaagctttgcaagaccaaagtcagaaa 9159774  T
Q  132 tctttggatcaaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 213  Q
     ||| ||   ||| |||||||||||||| |||||||| || || |||||||| || | ||||||||||||||| ||||||||    
T  9159775 ccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatg 9159856  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 15927217 - 15927165
Alignment:
Q  38 tcaggagccatgtatcccattgttcctcttgccgctgttaaagttaaaatact 90  Q
    ||||||||||||||||| || ||||||||||| || |||||||| | ||||||    
T  15927217 tcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatact 15927165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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