View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_28 (Length: 491)
Name: NF1358_high_28
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 40305916 - 40305605
Alignment:
| Q |
8 |
tagcataggtcatattctaaaaatgagtagaagcttcgctgctttgtagaatcaaatctaatatagaactaagtttctgacgttctgcagaaacttgaca |
107 |
Q |
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| T |
40305916 |
tagcatagggcatattctaaaaatgagtagaagcttcgctgctttgtagaatcaaatctaatatagaactaagtttctgacattctgcagaaacttgaca |
40305817 |
T |
|
| Q |
108 |
caactgatggtatgttatcttgtgacattaaagacacgctttcaaactttaaaaacagagttgattcatccatggtttaattaaactaaccatgagacaa |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
40305816 |
caaccgatggtatgttatcttgtgacattaaagacacgctttcaaactttaaaaacagagttgattcatccatggt----ttaaactaaccatgagataa |
40305721 |
T |
|
| Q |
208 |
gactaccacaatataccataatagttaacacttttggctcatctagttgttaaaaaattataagtaaaggtaacttttttctttctatttattgttatta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40305720 |
gactaccacaatataccataatagttaacacttttggctcatctagttgttaaaaaattacaagtaaaggtaacttttttctttctatttattgttatta |
40305621 |
T |
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| Q |
308 |
taccgaaattgccctt |
323 |
Q |
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|||||||||||||||| |
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| T |
40305620 |
taccgaaattgccctt |
40305605 |
T |
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