View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_29 (Length: 476)
Name: NF1358_high_29
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 465
Target Start/End: Original strand, 38877702 - 38878167
Alignment:
| Q |
6 |
acatttctcatatatattactacacaatcccattttgaannnnnnnctataatgtataatgccttattttt-------gttttgtagtctagtagctaga |
98 |
Q |
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| T |
38877702 |
acatttctcatatatattactacacaatcccattttgaatttttttctataatgtataatgccttattttttgtttttgttttgtagtttaatggctaaa |
38877801 |
T |
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| Q |
99 |
atgccttaatacatattttaaatttcacaaagaaaacttttattaaaaatcagtacatcaataattcaaacaaatatttattttgtttgattcttcaatc |
198 |
Q |
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| T |
38877802 |
atgccttaatacatactttaaatttcacaaagaaaacttttattaaaaatcagtacatcaataattcaaacaaatatttattttgtttgattcttcaatc |
38877901 |
T |
|
| Q |
199 |
aatggttttgagacagtaaataaataaggaagttacaaaaaataaaagaggtagatgaatatttgaattatnnnnnnnnnnnnnnnnnnnnnnnncaaat |
298 |
Q |
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| T |
38877902 |
aatg-ttttgagacagtaaataaataaggaagttacaaaaaataaaagaggtggatgaatatttgaattatcacactcacacacacgacacacaccaaat |
38878000 |
T |
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| Q |
299 |
ccaaccatccatacatgaaacaacttatttatgtgtttaggtaacatccttaacttatttacatccacttacccttgtaaatgttggtgacgtggcatat |
398 |
Q |
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| T |
38878001 |
ccaaccatccatacatgaaacaacttatttatgtgtttaggtaacatccttaacttatttacatccacttacccttgtaaatgttggtgacgtggcatat |
38878100 |
T |
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| Q |
399 |
tttcattggacacttacctgacaagacttaaacttgactatatcagacccaatatcgctttctctct |
465 |
Q |
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| T |
38878101 |
tttcattggacacttacctgacaagacttaaacttgactatatcagacccaatatcactttctctct |
38878167 |
T |
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