View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_33 (Length: 471)
Name: NF1358_high_33
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 43 - 462
Target Start/End: Original strand, 21013525 - 21013944
Alignment:
| Q |
43 |
tggtggtcagatagttgaggatttgagtggagaagctgggattgagaatgccgccgcagtgaagttggatagagtggtttcggaaagggaagtgaggtat |
142 |
Q |
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| T |
21013525 |
tggtggtcagatagttgagcatttgagtggagaagctgagattgagaatgccgccgcagttaagttggatagagtggtttcggaaagggaagcgaggtat |
21013624 |
T |
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| Q |
143 |
caatcaatagttggcactgactcttgcactatggaggatgctgctgaggccgcaggtcacccgtcgacatcactatttgctgacattttggaaacaattg |
242 |
Q |
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| T |
21013625 |
caatcaatagttggcactgactcttgcgctatggatgctgctgctgaggcagcaggtcacccgtcgacatcactatttgctgacattttggaaacaattg |
21013724 |
T |
|
| Q |
243 |
attcaatattgaacatgccgtttgtgaatgatggtaaagttgaccgcaattccagtattgttgatattgaggaaatgtcgaattttgggaatgataaatt |
342 |
Q |
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| T |
21013725 |
attcaatattgaacatgccgtttgtgaatgatggtaaagttgaccgcaattccagtattgttgatattgaggaaacgtcgaattttgggaatgataaatt |
21013824 |
T |
|
| Q |
343 |
tgatgccaactctaatattgttgttgatattatggaaacgatagattcgatattgaatatgccaattgggaatgataaagttgatggcaaaaccaatatt |
442 |
Q |
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| T |
21013825 |
tgatgccaactctaatattgttgttgatattatggaaacgatagattcgatattgaatatgccaattgggaatgataaagttgatggcaaaaccaatatt |
21013924 |
T |
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| Q |
443 |
gtacatgaagttgtctgtgg |
462 |
Q |
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| T |
21013925 |
gtacatgaagttgtctgtgg |
21013944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 3516860 - 3516753
Alignment:
| Q |
61 |
ggatttgagtggagaagctgggattgagaatgccgccgcagtgaagttggatagagtggtttcggaaagggaagtgaggtatcaatcaatagttggcact |
160 |
Q |
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| T |
3516860 |
ggatttgagtggagaagctgggagtgagaat---gtggcagttaagttggatagcatggtttcagagagggaagtgagggaccaatcaataattggtact |
3516764 |
T |
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| Q |
161 |
gactcttgcac |
171 |
Q |
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||||||||| |
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| T |
3516763 |
cgctcttgcac |
3516753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Complemental strand, 3516601 - 3516562
Alignment:
| Q |
416 |
gataaagttgatggcaaaaccaatattgtacatgaagttg |
455 |
Q |
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| T |
3516601 |
gataaagttgatggcaaaaccactattctacatgaagttg |
3516562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 299 - 462
Target Start/End: Complemental strand, 13117964 - 13117804
Alignment:
| Q |
299 |
attgttgatattgaggaaatgtcgaattttgggaatgataaatttgatgccaactctaatattgttgttgatattatggaaacgatagattcgatattga |
398 |
Q |
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|||| |||||||||||||||||| ||||||| ||||||||||||||| || ||||||| |||||||||| |||||||||||||||| |||||||| |
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| T |
13117964 |
attgatgatattgaggaaatgtcaaattttgagaatgataaatttgacatgaagtctaata---ttgttgatatcatggaaacgatagatttgatattga |
13117868 |
T |
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| Q |
399 |
atatgccaattgggaatgataaagttgatggcaaaaccaatattgtacatgaagttgtctgtgg |
462 |
Q |
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| T |
13117867 |
acatgccgattgggaacgataaagttgatggcaaagccaatattgtagatgaagttgtttgtgg |
13117804 |
T |
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