View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_37 (Length: 434)
Name: NF1358_high_37
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_37 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 65 - 424
Target Start/End: Complemental strand, 38275551 - 38275192
Alignment:
| Q |
65 |
cttttatatgtgaaacctgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataa |
164 |
Q |
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| T |
38275551 |
cttttatatgtgaaacctgtgatcacattgcagaatattcaatttcttatttatcgccaaaggctctcctatctttcgaactaaattgttgatttcataa |
38275452 |
T |
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| Q |
165 |
ctctaatttctagctggtgagtttttccttatccttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggt |
264 |
Q |
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| T |
38275451 |
ctctaatttctagctggtgagtttttccttatccttataatttttatgcattttcccccctttcgttatcaaagatatatttattttctcaacagtcggt |
38275352 |
T |
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| Q |
265 |
aagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatgg |
364 |
Q |
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| T |
38275351 |
aagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaagaatgg |
38275252 |
T |
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| Q |
365 |
atgatgtggttatagttttcggttctcttttatttcatcaaattcccttgtttgtctgtg |
424 |
Q |
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| T |
38275251 |
atgatgtggttatagttttcggttctcttttatttcatcaaattcccttgtttgtgtgtg |
38275192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 36870555 - 36870449
Alignment:
| Q |
260 |
tcggtaagatgtttgttatccacgtctctaggtgtcaatgtattttgtgtgttcactgtcatgcttttagaattgagatgtctgagatgattcaaggaag |
359 |
Q |
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| T |
36870555 |
tcggtaagatgtttgttcttcacgtctctaggtgtcaatgcatttcaagtgttctctgttatgcttttagatttgagaattctgagatgatgcaaggaag |
36870456 |
T |
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| Q |
360 |
aatggat |
366 |
Q |
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| T |
36870455 |
aatggat |
36870449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 37962355 - 37962416
Alignment:
| Q |
145 |
ctaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
206 |
Q |
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| T |
37962355 |
ctaaattgttggattgataactctaattgctagctggtgagttttaccttatccttttaatt |
37962416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 20392 - 20455
Alignment:
| Q |
143 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
206 |
Q |
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| T |
20392 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
20455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 16430410 - 16430473
Alignment:
| Q |
143 |
aactaaattgttgatttcataactctaatttctagctggtgagtttttccttatccttataatt |
206 |
Q |
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| T |
16430410 |
aactgaattgttggattcataactctaattgctagctggtgagttttatcttatccttttaatt |
16430473 |
T |
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