View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_38 (Length: 433)
Name: NF1358_high_38
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 29 - 421
Target Start/End: Original strand, 42947706 - 42948096
Alignment:
| Q |
29 |
aggtccaatcattaatcatgacatgattgagctgagtttttcatccacaaaaatgaatgcaactcaaaatattgggttagatatctcgaattgaaccaaa |
128 |
Q |
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| T |
42947706 |
aggtccaatcattaataatgacatgattgagctgagtttttcatccacaaaaatgaatgcaactcaaaatattgggttagatatc--gaattgaaccaaa |
42947803 |
T |
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| Q |
129 |
ggcaagttgcatgagcatatgcataaataaatacataaagtacgacctctagctctagttttcgttttcaccttgatagcttgtcatgtttgatagcgta |
228 |
Q |
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| T |
42947804 |
ggcaagttgtatgagcatatgcataaataaatacataaagtacgacctctagctctagttttcgttttcaccttgatagcttgtcatgtttgatagcgta |
42947903 |
T |
|
| Q |
229 |
tctattgcaagatctcgtaatctcatctcttatcgaatcaagcttaacttatttgtgtgttgcatgagatgctagctatgcggtattaatggcatttggc |
328 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42947904 |
tctattgcaagatctcgtaatctcatctcttattgaatcaagcttaacttatttgtgtgttgcatgagatgctagctatgtggtattaatggcatttggc |
42948003 |
T |
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| Q |
329 |
cccatattgagcctctgttgattgtggtttattccagttttatactttcgagctgcagattagaaaggggaccaacaatgtgtgatatatatt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42948004 |
cccatattgagcctctgttgattgtggtttattccagttttatactttcgagctgcagattagaaaggggaccaacaatgtgtgatatatatt |
42948096 |
T |
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