View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_40 (Length: 432)
Name: NF1358_high_40
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_40 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 28 - 422
Target Start/End: Complemental strand, 1249601 - 1249209
Alignment:
| Q |
28 |
aatattaatagttaatattttatggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagcagttctgaaa |
127 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1249601 |
aatattgatagtaaatattttatggttaacaactatggaatatatgtgattcatgatttattcgtaaagtatttaatcgtgatatatagcagttctgaaa |
1249502 |
T |
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| Q |
128 |
taataattgctattggttatggactgatcaagcagtttcattcacgcatgtaataatacttaagaagatgagaacgtacttaaaacatgtagactatcca |
227 |
Q |
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| T |
1249501 |
taataaatgctattggttatggactgatcaagaagtttcattcacgcatgtaataatacttaagaagatgagaacgtacttaaaacat--agactatcca |
1249404 |
T |
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| Q |
228 |
tactaattataattagattgcatttctcttaactccatgcataaacaagagcacaataatacatgaagtccatttattaagcatgcatccctttagttaa |
327 |
Q |
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| T |
1249403 |
tactaattataattagattgcatttctcttaactccatgcataaacaagagcacaataatacatgaagtccatttattaagcatgcatccctttagttaa |
1249304 |
T |
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| Q |
328 |
ctaggccttgcaaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctccatcctttg |
422 |
Q |
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| T |
1249303 |
ctaggtcttgcaaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctccatcctttg |
1249209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 12078961 - 12079037
Alignment:
| Q |
338 |
caaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctcc |
414 |
Q |
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| T |
12078961 |
caagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctcc |
12079037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 14959246 - 14959178
Alignment:
| Q |
50 |
tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca |
118 |
Q |
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| T |
14959246 |
tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca |
14959178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 39491151 - 39491083
Alignment:
| Q |
50 |
tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca |
118 |
Q |
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| T |
39491151 |
tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca |
39491083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 18489 - 18421
Alignment:
| Q |
50 |
tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca |
118 |
Q |
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| T |
18489 |
tggttaaaaactatgaaatatatgtgattcgtgatttattcttgaagtatttaatcgtggtatatagca |
18421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 27585526 - 27585594
Alignment:
| Q |
50 |
tggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca |
118 |
Q |
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| T |
27585526 |
tggttaaaaactatggaatatatgtgattcgtgatttattcttgaagtatttaattgtggtatatagca |
27585594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 2224116 - 2224047
Alignment:
| Q |
49 |
atggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagca |
118 |
Q |
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| T |
2224116 |
atggtcaaaaactatgaaatatatgtgattcgtgatttattcttgaaatatttaatcgtggtatatagca |
2224047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 35181834 - 35181763
Alignment:
| Q |
49 |
atggttaacaactatggaatacatgtgattcatgatttattcgtgaagtatttaatcgtgatatatagcagt |
120 |
Q |
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| T |
35181834 |
atggttaaaaactaggagatatatgtaattcgtgatttattcttaaagtttttaatcgtgatatatagcagt |
35181763 |
T |
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