View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_44 (Length: 425)
Name: NF1358_high_44
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 29 - 351
Target Start/End: Complemental strand, 39724520 - 39724189
Alignment:
| Q |
29 |
aacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcactcaagttgtctagatatca--------------acaagttgg |
114 |
Q |
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| T |
39724520 |
aacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcactcaagttgtctagatatcatatgagaaaattcaacaagttgg |
39724421 |
T |
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| Q |
115 |
aaatcgatcgagagggttatgtagttgaaatgatgtcannnnnnnnnnnnnnnattgtgaaaaatgtaatattgaaggaaacaaataattaaggaaaaaa |
214 |
Q |
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| T |
39724420 |
aaatcgatcgagagggttatgtagttgaaatgatgtcatttttttttt-----attgtgaaaaatgtaatattgaaggaaacaaataattaaggaaaaaa |
39724326 |
T |
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| Q |
215 |
tgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtcatatatacctctaatgaattatttctgtgctaacgactagta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
39724325 |
tgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtcatatatacctctaatgaattatttatgtgcttactactagta |
39724226 |
T |
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| Q |
315 |
gtctagtacattggtaaccagctattaatgtactatt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39724225 |
gtctagtacattggtaaccagctattaatgtactatt |
39724189 |
T |
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