View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_49 (Length: 417)
Name: NF1358_high_49
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 33205028 - 33204670
Alignment:
| Q |
11 |
cacagacaaagttatagaaccatttattttcccaaacaattaaacatcaaattaccaacggggtcaattagattacagatattgagctatttaatctctc |
110 |
Q |
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| T |
33205028 |
cacagacaaagttatagaaccatttattttcccaaacaattaaacatcaaaataccaacggggtcaattagattacagatattgagctatttaatctctc |
33204929 |
T |
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| Q |
111 |
acttttacagcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacacaaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33204928 |
acttttacagcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacacaaaaa |
33204829 |
T |
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| Q |
211 |
caaaatgatctggaaaaaatacaagcctttgtatttctcatttcccagc--nnnnnnnnnccttttagtatctttagtttaacataatt--nnnnnnnnn |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33204828 |
caaaatgatctggaaaaaatacaagcctttgtatttctcatttcccagctttttttttttccttttagtatctttagtttaacataattaaaaaaaaaaa |
33204729 |
T |
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| Q |
307 |
nnctaaattaaagttaaattaaaattgcagtcttgctaatgtgagcttcgcagcttata |
365 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||| || |||||| |
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| T |
33204728 |
aactaaattaaagttaaattaaaattacattcttgctaatgtgagcttcacatcttata |
33204670 |
T |
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