View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_51 (Length: 409)
Name: NF1358_high_51
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 37201454 - 37201818
Alignment:
| Q |
30 |
tatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatc |
129 |
Q |
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| T |
37201454 |
tatcttaactgtgctaaagggtttctgtatatagaaccagctcttgtagacatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatc |
37201553 |
T |
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| Q |
130 |
aatggaggacttgcaaatgtgtagtccaagattatgctcttctatcacaaagaaaactgtgtaatgccattagttctctccagggtatgtagatatatgc |
229 |
Q |
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| T |
37201554 |
aatggaggacttgcaaatgtgcagtccaagattatgctcttctatcacaaagaaaactgtgtaatgccattagttctctccagggtatgtagatatatgc |
37201653 |
T |
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| Q |
230 |
atatagcatcatggttatgaaccaaaaagatatagatgacacctaataaatcatgatttattttgagttaggattataaattatttccacttcttattga |
329 |
Q |
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| T |
37201654 |
atatagcatcatggttatgaaccaaaaagatatagatgacacctaataaatcatgatttattttgagttagg-------attatttccacttcttattga |
37201746 |
T |
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| Q |
330 |
gaactaagcaatatactctattaaataaacgacagannnnnnnatagcatctctactagcaagagaataatc |
401 |
Q |
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| T |
37201747 |
gaactaagcaatatactctattaaataaacgacagatttttttatagcatctctactagcaagagaataatc |
37201818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 37211067 - 37211139
Alignment:
| Q |
79 |
acatgcaaaagttatgttacttttcctgtgaacagttcc-taaagcataatcaatggaggacttgcaaatgtg |
150 |
Q |
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| T |
37211067 |
acatgcaaaaggtatgttacttttcttgtgagcatttccctaaagcacaatcaatggaggacttgcaaatgtg |
37211139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 37182582 - 37182645
Alignment:
| Q |
163 |
atgctcttctatcacaaagaaaactgtgtaatgccattagttctctccagggtatgtagatata |
226 |
Q |
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| T |
37182582 |
atgctcttctctcactaagattactgtctaatgccattagttctctccagggtatctagatata |
37182645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 37193714 - 37193777
Alignment:
| Q |
163 |
atgctcttctatcacaaagaaaactgtgtaatgccattagttctctccagggtatgtagatata |
226 |
Q |
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| T |
37193714 |
atgctcttctctcactaagattactgtctaatgccattagttctctccagggtatctagatata |
37193777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 37216577 - 37216626
Alignment:
| Q |
129 |
caatggaggacttgcaaatgtgtagtccaagattatgctcttctatcaca |
178 |
Q |
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| T |
37216577 |
caatggaggacttgcaaatgtatagttcaagattatgctcgtctttcaca |
37216626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 37182405 - 37182473
Alignment:
| Q |
79 |
acatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatgga-ggacttgcaaa |
146 |
Q |
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| T |
37182405 |
acatgaaaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaa |
37182473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 37193537 - 37193605
Alignment:
| Q |
79 |
acatgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatgga-ggacttgcaaa |
146 |
Q |
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| T |
37193537 |
acatgaaaaaggtatcttaattttcctgtgaatatttcctaaagcacaattaatggatggacttgcaaa |
37193605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 415357 - 415260
Alignment:
| Q |
81 |
atgcaaaagttatgttacttttcctgtgaacagttcctaaagcataatcaatggaggacttgcaaatgtgtagtccaagattatgctcttctatcacaa |
179 |
Q |
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| T |
415357 |
atgcaaaaggtgtgttacttttcttgtaaacatttcctaaagcacaatcaatggagga-ttgcaaatgtgtaatccaagattatgctcttctctcacaa |
415260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 415239 - 415120
Alignment:
| Q |
240 |
atggttatgaaccaaaaagatatagatgacacc-------taataaatcatgatttattttgagttaggattataaattatttccacttcttattgagaa |
332 |
Q |
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| T |
415239 |
atggttatgaaccaaaaagatatagataacaccctctaactaataaatcatgatttattttgagtta-------agattatttccacatcttattcagaa |
415147 |
T |
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| Q |
333 |
ctaagcaatatactctattaaataaac |
359 |
Q |
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| T |
415146 |
ttaagcaatatgttctattcaataaac |
415120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 7526835 - 7526906
Alignment:
| Q |
81 |
atgcaaaagttatgttacttttcct-gtgaacagttcc-taaagcataatcaatggaggacttgcaaatgtg |
150 |
Q |
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| T |
7526835 |
atgcaaaaggtatgttacttttccttgtgaacatttccctaaagcacaatcaatggaggactggcaattgtg |
7526906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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