View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_52 (Length: 406)
Name: NF1358_high_52
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_52 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 28 - 394
Target Start/End: Complemental strand, 270528 - 270162
Alignment:
| Q |
28 |
catgttcatcctcagccataggagagnnnnnnnccttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagt |
127 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
270528 |
catgttcatcctcagccataggagagaaaaaaaccttaggacaccttgactttacaccatattttttacaaaagggaacccatactttagcaaattgagt |
270429 |
T |
|
| Q |
128 |
agcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaaca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270428 |
agcctctttaatcccaaaaagagtaatagcagaagcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaaca |
270329 |
T |
|
| Q |
228 |
acagtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270328 |
acagtgttcataacttcaaccgttggttctttttcaggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcga |
270229 |
T |
|
| Q |
328 |
ccattaccgatcgactcaccggacgccatcggtatgcttggttgaaaaaccacaagactgatagaat |
394 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270228 |
ccattaccgatcgactcaccggccgccatcggtatgcttggttgaaaaaccacaagactgatagaat |
270162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 62 - 399
Target Start/End: Original strand, 17588882 - 17589219
Alignment:
| Q |
62 |
cttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaa |
161 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||| |
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| T |
17588882 |
cttaggacaccttgacttaacaccatatttcttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaatcccaaatagagtaatggtagaa |
17588981 |
T |
|
| Q |
162 |
gcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttcttttt |
261 |
Q |
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| |||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17588982 |
cctccatcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaacagtgttcataacttctaccgttggttcttttt |
17589081 |
T |
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| Q |
262 |
caggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggta |
361 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || || ||| ||||||| ||||| ||| | |
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| T |
17589082 |
caggatcaatcgtacacacaaatatgtcgagtcccggtaacttctcttcagccggtaatttctcggtcatcactgaacgagtcaccggccgccaacggaa |
17589181 |
T |
|
| Q |
362 |
tgcttggttgaaaaaccacaagactgatagaattatct |
399 |
Q |
| |
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||||||||||||| ||||| | ||||||||| |||| |
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| T |
17589182 |
cgcttggttgaaaacccacataaatgatagaataatct |
17589219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 62 - 399
Target Start/End: Complemental strand, 12103 - 11766
Alignment:
| Q |
62 |
cttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaa |
161 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
12103 |
cttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattcaaaagcctctttaatcccaaaaagagtaataggggaa |
12004 |
T |
|
| Q |
162 |
gcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttcttttt |
261 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
12003 |
cctccatcatcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcataacatcaaccgttggttcttttt |
11904 |
T |
|
| Q |
262 |
caggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggta |
361 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||| || || ||| | ||| | | ||| ||| | |
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| T |
11903 |
caggatcaatcgtacacacaaatatgtcgagtcccggtaacttctcgtcgggcggtaatttctcggtcataactgaacgatttaccagcctccaacggaa |
11804 |
T |
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| Q |
362 |
tgcttggttgaaaaaccacaagactgatagaattatct |
399 |
Q |
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||||||||||||||||||||| | ||||||||| |||| |
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| T |
11803 |
tgcttggttgaaaaaccacaaaaatgatagaataatct |
11766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 62 - 381
Target Start/End: Original strand, 16385730 - 16386049
Alignment:
| Q |
62 |
cttaggacaccttgactttacaccatattttttacaaaagggaacccaaactttagcaaattgagtagcctctttaatcccaaaaagagtaatagcagaa |
161 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||| |
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| T |
16385730 |
cttaggacaccttgacttaacatcatattttttacaaaaaggaacccaaactttagcaaattgaaaagcctctttaataccaaaaagagtaacaggagaa |
16385829 |
T |
|
| Q |
162 |
gcaccatcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttcttttt |
261 |
Q |
| |
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| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
16385830 |
cctccatcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttcttttt |
16385929 |
T |
|
| Q |
262 |
caggatcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggta |
361 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||| || |||||| | | ||| ||||| ||| | |
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| T |
16385930 |
caggatcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggccggtaaattctcggtcataactgatcgagttatcggccgccaacggaa |
16386029 |
T |
|
| Q |
362 |
tgcttggttgaaaaaccaca |
381 |
Q |
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|||||||| | ||||||||| |
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| T |
16386030 |
tgcttggtgggaaaaccaca |
16386049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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