View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_54 (Length: 403)

Name: NF1358_high_54
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_54
NF1358_high_54
[»] chr1 (2 HSPs)
chr1 (8-307)||(27876145-27876444)
chr1 (91-279)||(15231070-15231258)
[»] chr6 (4 HSPs)
chr6 (8-308)||(32894463-32894763)
chr6 (7-303)||(13107527-13107824)
chr6 (8-308)||(25905711-25906011)
chr6 (84-148)||(9957798-9957862)
[»] chr8 (6 HSPs)
chr8 (8-308)||(18177592-18177893)
chr8 (8-308)||(26952807-26953107)
chr8 (8-140)||(21277753-21277885)
chr8 (235-308)||(21277940-21278013)
chr8 (41-192)||(9810115-9810266)
chr8 (92-148)||(43219560-43219616)
[»] chr2 (1 HSPs)
chr2 (8-308)||(28591320-28591620)
[»] chr5 (3 HSPs)
chr5 (8-308)||(30303312-30303612)
chr5 (8-146)||(24869792-24869930)
chr5 (92-148)||(16042604-16042660)
[»] chr3 (3 HSPs)
chr3 (8-308)||(1018085-1018385)
chr3 (67-303)||(42435456-42435692)
chr3 (103-148)||(14505402-14505447)
[»] chr4 (2 HSPs)
chr4 (8-308)||(23060709-23061009)
chr4 (99-210)||(37840227-37840338)
[»] chr7 (3 HSPs)
chr7 (83-185)||(20489771-20489873)
chr7 (68-192)||(9815637-9815761)
chr7 (68-192)||(10717562-10717686)
[»] scaffold0252 (1 HSPs)
scaffold0252 (84-148)||(6490-6554)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 27876444 - 27876145
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  27876444 ccaataaaatcagaagtaagaaaatatctagctttaaataatcgacaaacaaggctactagaatcaatttggaacctccatccctgtttccctaacatag 27876345  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  27876344 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaatttatgaacagacaaccttttctaagacatccaatgtaatctgcgacgcatatt 27876245  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27876244 accgtcgtggccccaccaaaaagaattaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 27876145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 279
Target Start/End: Complemental strand, 15231258 - 15231070
Alignment:
Q  91 ctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgt 190  Q
    |||||| ||||  ||||||||||||||||| || ||||||||||| |||||||||| ||||   | |||| | || ||||||||| | ||||||||||||    
T  15231258 ctgtttgcctattatagccacattaaaagatgttaaatccttaaaccccatacctctaaaattcttatgatccgataacctttcccacgacatccaatgt 15231159  T
Q  191 aatccgcgacgcatattaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaa 279  Q
    || || |  |||| ||||||  | |  | || ||||||||  || ||||||||||| ||||||||||| |  |||||||| ||||||||    
T  15231158 aaccctctgcgcaaattaccaccattacgccaccaaaaagcatttatcattttttcaattgcatcaactaatttatttggcagtaaaaa 15231070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 32894763 - 32894463
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  32894763 ccaataaaatcagaagtaggaaaatatctagctttaaataatcgacaaacaaggctactagaatcagtttggaacctccatccctgtttccctaacatag 32894664  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32894663 ccacattaaaagaagtcaaatccttaaagcacatacctccaaaaaatttatgaacagacaacctttcccaagacatccaatgtaatccgcgacgcatatt 32894564  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    ||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  32894563 accatcgtggccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagtagaaagatgctcataatataagatgagatggat 32894464  T
Q  308 t 308  Q
    |    
T  32894463 t 32894463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 13107527 - 13107824
Alignment:
Q  7 tccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacata 106  Q
    |||||||| ||||||  || ||| |||| || | || ||| ||||||||||||   | ||||||||| ||||| ||||||||||||||||||||||||||    
T  13107527 tccaataaaatcagacttaggaagatatctatccttgaattatcgacaaacaagattgctagaatcactttggtacctccatccctgtttccctaacata 13107626  T
Q  107 gccacattaaaagaagtcaaatccttaaa-gcccatacctccaaaaaa-ttcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcat 204  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||  ||| |||||| || |||||||||||||||| ||| ||||    
T  13107627 gccacattaaaagaggtcaaatccttaaaagcccatacctccaaaaaaatttatgaacatgcaatctttcccaa-acatccaatgtaatccacgatgcat 13107725  T
Q  205 attaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggat 303  Q
    |||||||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13107726 attaccgttgtggccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagcaaaaagatgctcataatataagatgggat 13107824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 25905711 - 25906011
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| |||||||||||||||||||   | ||||| ||  ||||| |||||||||||||||||||||||||||    
T  25905711 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagtttgctagactctgtttggaacctccatccctgtttccctaacatag 25905810  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| ||||||||||||| | |||| |||||||||| || ||||| |||||| |||||| | ||||||||||||||||| |||||||||||    
T  25905811 ccacattaaaagaggtcaaatccttaatggccatgcctccaaaaattttatgaatagacaatctttcccaggacatccaatgtaatccacgacgcatatt 25905910  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||| | ||||| | ||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||    
T  25905911 accgccatggcctcaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaactgctcataatataagatgagattgat 25906010  T
Q  308 t 308  Q
    |    
T  25906011 t 25906011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 9957862 - 9957798
Alignment:
Q  84 tccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca 148  Q
    |||||||||||||||| |||||||| | |||||||| ||  |  |||||||| ||||||||||||    
T  9957862 tccatccctgtttccccaacatagctaaattaaaagcagagaggtccttaaaacccatacctcca 9957798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 18177893 - 18177592
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||||||| |||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |||| ||||||||    
T  18177893 ccaataaaatcagaattaggaaaatatctagctttaaataatcgacaaacaaggctgctagaatcagtttggaacctccatccctgcttccttaacatag 18177794  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||     
T  18177793 ccacattaaaagatgtcaaatccttaaagcccatacctccaaaaaaattatgaacagacaacctttcccaagacatcgaatgtaatccgcgacgcatatc 18177694  T
Q  208 accgtcgtggcccctccaaaaa-gatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatgga 306  Q
    |||| ||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  18177693 accgccgtggccccaccaaaaagggattaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcatgatataagatgggataga 18177594  T
Q  307 tt 308  Q
    ||    
T  18177593 tt 18177592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 26952807 - 26953107
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| |||||||||||||||||||  || ||||| ||  ||||| ||||||||| |||||||||||||||||    
T  26952807 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatctctgtttccctaacatag 26952906  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||| |||||| | ||||||||||||||||| |||||||||||    
T  26952907 ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaatatttatgaacaaacaatctttcccaggacatccaatgtaatccacgacgcatatt 26953006  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||| | ||||||| ||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  26953007 accgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat 26953106  T
Q  308 t 308  Q
    |    
T  26953107 t 26953107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 21277753 - 21277885
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| || ||||||  |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21277753 ccaataaaataagaagtgggaaaatatctagctttaaataatcgacaaacaaggctactagaatcagtttggaacctccatccctgtttccctaacatag 21277852  T
Q  108 ccacattaaaagaagtcaaatccttaaagccca 140  Q
    ||||||||||||| |||||||||||||||||||    
T  21277853 ccacattaaaagaggtcaaatccttaaagccca 21277885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 21277940 - 21278013
Alignment:
Q  235 aatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggatt 308  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21277940 aataattttatctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatagatt 21278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 9810115 - 9810266
Alignment:
Q  41 ttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagccca 140  Q
    ||||| || ||| |||||| |||| | | |||||||||  | ||||| || |||||  |||||||||||||||||||||| ||||| || ||||||| ||    
T  9810115 ttaaacaaacgagaaacaaggctagttggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctca 9810214  T
Q  141 tacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaa 192  Q
    ||||||||||||| | ||||||| | ||| ||||| |||||||||| |||||    
T  9810215 tacctccaaaaaaattatgaacaaataacttttcccaagacatccagtgtaa 9810266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 43219560 - 43219616
Alignment:
Q  92 tgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca 148  Q
    ||||||||||||||||||| |||| ||| ||| ||||| ||||| ||||| ||||||    
T  43219560 tgtttccctaacatagccagattataagcagtaaaatctttaaatcccatgcctcca 43219616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 28591320 - 28591620
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| |||||||||||||||||||  || ||||| ||  ||||| |||||||||||||||||||||||||||    
T  28591320 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatccctgtttccctaacatag 28591419  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| |||||||||||    
T  28591420 ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt 28591519  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||||| ||||||| ||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  28591520 accgtcatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat 28591619  T
Q  308 t 308  Q
    |    
T  28591620 t 28591620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 30303612 - 30303312
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| |||||||||||||||||||  || ||||| ||  ||||| |||||||||||||||||||||||||||    
T  30303612 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatccctgtttccctaacatag 30303513  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| |||||||||||    
T  30303512 ccacattaaaagaggtcaaatccttaaagctcatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt 30303413  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||| | ||||||| ||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  30303412 accgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat 30303313  T
Q  308 t 308  Q
    |    
T  30303312 t 30303312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 24869930 - 24869792
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| |||| || || |||||||  |||| |||||||||||||||||||  ||| || ||||| ||||| |||||||||||||||||| ||||||||    
T  24869930 ccaataaaatcataattaggaaaataactagccttaaataatcgacaaacaagactattaaaatcagtttggaacctccatccctgtttccgtaacatag 24869831  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctc 146  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  24869830 ccacattaaaagaagtcaaatccttaaaactcatacctc 24869792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 16042660 - 16042604
Alignment:
Q  92 tgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca 148  Q
    ||||| ||||| ||||| | |||||||| ||||||||| ||||| ||||||||||||    
T  16042660 tgttttcctaagatagctagattaaaagcagtcaaatctttaaatcccatacctcca 16042604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1018085 - 1018385
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| ||| ||| ||||| ||||| || || |||||||||| ||||||||||    
T  1018085 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaaggcttctataatcagtttggaacttctatccctgttttcctaacatag 1018184  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| |||||||||||    
T  1018185 ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt 1018284  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||||| ||||||| ||| ||||  |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||    
T  1018285 accgtcatggccccaccagaaagcattaaccaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgagattgat 1018384  T
Q  308 t 308  Q
    |    
T  1018385 t 1018385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 303
Target Start/End: Complemental strand, 42435692 - 42435456
Alignment:
Q  67 agaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagac 166  Q
    ||||||| ||||| ||||||| || ||||| ||||||||||||||||||||||| |||| ||||||||| ||||| | |||||||   | ||||||| |     
T  42435692 agaatcagtttggaacctccaaccttgttttcctaacatagccacattaaaagatgtcagatccttaaaccccatgcatccaaaattcttatgaacaaat 42435593  T
Q  167 aacctttcctaagacatccaatgtaatccgcgacgcatattaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttat 266  Q
    || |||||| ||||||||||||||||  | |  ||||||||||| || |  |||| |||||| |  || ||||||||||| ||||||||||| |  ||||    
T  42435592 aatctttcccaagacatccaatgtaactctctgcgcatattaccatcattaccccaccaaaaggcatttatcattttttcaattgcatcaactaatttat 42435493  T
Q  267 ttggaagtaaaaagatgctcataatataagatgggat 303  Q
    |||| ||||||| ||  ||||||||||||||||||||    
T  42435492 ttggcagtaaaaggacactcataatataagatgggat 42435456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 14505402 - 14505447
Alignment:
Q  103 catagccacattaaaagaagtcaaatccttaaagcccatacctcca 148  Q
    |||||||||||||||||  | ||||||||| |||||||||||||||    
T  14505402 catagccacattaaaagctgccaaatccttgaagcccatacctcca 14505447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 23060709 - 23061009
Alignment:
Q  8 ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag 107  Q
    ||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| | | ||||| ||  ||||| |||||||||||||||||||||||||||    
T  23060709 ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaaggttgctagactctgtttggaacctccatccctgtttccctaacatag 23060808  T
Q  108 ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt 207  Q
    ||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||||| |||||| | |||||||||||||||||  ||||||||||    
T  23060809 ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaattttatgaacagacaatctttccaaggacatccaatgtaatccatgacgcatatt 23060908  T
Q  208 accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat 307  Q
    |||| | |||||||  || ||||  ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  23060909 accgccatggccccatcagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat 23061008  T
Q  308 t 308  Q
    |    
T  23061009 t 23061009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 37840227 - 37840338
Alignment:
Q  99 ctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcg 198  Q
    ||||||||| |||||||||||| ||||||||| |||| | |||||||||||||   | ||| || |||||| ||||| |||||||||| ||||| || ||    
T  37840227 ctaacatagacacattaaaagaggtcaaatccataaacctcatacctccaaaattgttatggacggacaacttttccaaagacatccagtgtaacccacg 37840326  T
Q  199 acgcatattacc 210  Q
     ||| |||||||    
T  37840327 tcgcgtattacc 37840338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 20489873 - 20489771
Alignment:
Q  83 ctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagaca 182  Q
    ||||| || ||||| ||||||||||||| | ||||||| ||||| |||||||| | ||||||||||||| | | ||||||||||||| ||||| ||||||    
T  20489873 ctccaaccttgtttacctaacatagccataataaaagatgtcaagtccttaaacctcatacctccaaaacaattatgaacagacaacttttccaaagaca 20489774  T
Q  183 tcc 185  Q
    |||    
T  20489773 tcc 20489771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 9815637 - 9815761
Alignment:
Q  68 gaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagaca 167  Q
    |||||| ||||| | ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| |||||||||   | |||| |||| |    
T  9815637 gaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaaccacatgcctccaaaattcttatgagcagata 9815736  T
Q  168 acctttcctaagacatccaatgtaa 192  Q
    |||||| | |||| ||| |||||||    
T  9815737 accttttcgaagatatcaaatgtaa 9815761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 10717562 - 10717686
Alignment:
Q  68 gaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagaca 167  Q
    |||||| ||||| | ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| |||||||||   | |||| |||| |    
T  10717562 gaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaaccacatgcctccaaaattcttatgagcagata 10717661  T
Q  168 acctttcctaagacatccaatgtaa 192  Q
    |||||| | |||| ||| |||||||    
T  10717662 accttttcgaagatatcaaatgtaa 10717686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 6554 - 6490
Alignment:
Q  84 tccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca 148  Q
    |||||||||||||||| |||||||| | |||||||| ||  |  |||||||| ||||||||||||    
T  6554 tccatccctgtttccccaacatagctaaattaaaagcagagaggtccttaaaacccatacctcca 6490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University