View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_55 (Length: 402)
Name: NF1358_high_55
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 32208265 - 32207885
Alignment:
| Q |
13 |
acactctataaatagctccttgtagcattgtttgttcatctttcaagagaatacgacaacaggtatcaaccgggtgcattttttcattgtaattttatgt |
112 |
Q |
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| T |
32208265 |
acactctataaatagctccttgtagcattgtttgttcatctttcaagagaatatgacaacatgtatcaaccgggtgcattttttcattgcaattttatgt |
32208166 |
T |
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| Q |
113 |
attgcttccgttttgacaataggtaaaatatttacttcatctacaactannnnnnnnacaaattagatcaataataaaacttgttagatttattaatatt |
212 |
Q |
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| T |
32208165 |
attgcttccgttttgacaataggtaaaatctttacttcatctacaactattttttttacaaattagatcaataataaaacttgttagattta---atatt |
32208069 |
T |
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| Q |
213 |
tgatatgctgacat----cttgtgaaattactatattgattgtaggaggagcagttgatggaatacctccttatgattattgcattggcaaagggccatg |
308 |
Q |
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| T |
32208068 |
tgatatgctgacatgcatcttgtgacattactatattgattgtaggaggagcagttgatggaatacctccttatgattattgcattggcaaagggccatg |
32207969 |
T |
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| Q |
309 |
tctaagtaaaggtcaagattgtggtaattattgtttaagaaatggctatactttgggtggcaggtgtgattgcaaacctctgtg |
392 |
Q |
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| T |
32207968 |
tctaagtaaaggtcaagattgtggtaattattgtttaagaaatggctatactttgggtggcaagtgtgattacaaacctgtgtg |
32207885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 32221654 - 32221274
Alignment:
| Q |
13 |
acactctataaatagctccttgtagcattgtttgttcatctttcaagagaatacgacaacaggtatcaaccgggtgcattttttcattgtaattttatgt |
112 |
Q |
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| T |
32221654 |
acactatataaatagctccttgtagccttgtttgttcatctttcaagagaatatgacaacaggtatcaaccgggtgcattttttcattgcaattctatgt |
32221555 |
T |
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| Q |
113 |
attgcttccgttttgacaataggtaaaatatttacttcatctacaactannnnnnnnacaaattagatcaataataaaacttgttagatttattaatatt |
212 |
Q |
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| T |
32221554 |
atcgcttccgttttgacaataggtaaaatctttacttcatctacaactattttttttacaaattagatcaataataaaacttgttagattta---atatt |
32221458 |
T |
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| Q |
213 |
tgatatgctgacat----cttgtgaaattactatattgattgtaggaggagcagttgatggaatacctccttatgattattgcattggcaaagggccatg |
308 |
Q |
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| T |
32221457 |
tgatatgctgacatgcatcttgtgacattactatattgattgtaggaggagcagttgatggaatacctccttatgattattgcattggcaaagggccatg |
32221358 |
T |
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| Q |
309 |
tctaagtaaaggtcaagattgtggtaattattgtttaagaaatggctatactttgggtggcaggtgtgattgcaaacctctgtg |
392 |
Q |
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| T |
32221357 |
tctaagtaaaggtcaagattgtggtaattattgtttaagaaatgggtatactttgggtggaaagtgtgatgacaaacctgtgtg |
32221274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 32244903 - 32244969
Alignment:
| Q |
243 |
attgattgtaggaggagcagttgatggaatacctccttatgattattgcattggcaaagggccatgt |
309 |
Q |
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| T |
32244903 |
attgattgtaggaggagcaattgatggaatacctcctttcagttattgcattagcatagggccatgt |
32244969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 31809024 - 31809081
Alignment:
| Q |
285 |
ttattgcattggcaaagggccatgtctaagtaaaggtcaagattgtggtaattattgt |
342 |
Q |
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| T |
31809024 |
ttattgcattggcaaaggtccatgtccaaataaggatcaagattgtgccaattattgt |
31809081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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