View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_60 (Length: 386)
Name: NF1358_high_60
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 340
Target Start/End: Complemental strand, 51941523 - 51941370
Alignment:
| Q |
187 |
gtttcaatctcattctcagttctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttccgatg |
286 |
Q |
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| T |
51941523 |
gtttcaatctcattcccaattctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctcttccgatg |
51941424 |
T |
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| Q |
287 |
accgtccaccgtaccaacggcgataacaccactgactatcaattattctcctcc |
340 |
Q |
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| T |
51941423 |
accgtccaccgtaccggcggcgataacaccattgactgtcaattattctcctcc |
51941370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 51941698 - 51941551
Alignment:
| Q |
3 |
ataaatttatattcatgtggtttaaaaaactaaatcaataagaggttagtttagtaaaagaaaaaagagtgatgataggtaaacacacataggtggcata |
102 |
Q |
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| T |
51941698 |
ataattttatattcatgtggtttaaaaaattaaatcaataagaggttagtttagtaaaagaaaaaagagtgatgataggtaaacacacacaggtggcata |
51941599 |
T |
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| Q |
103 |
ccatcttatacacactcaaaaataatattaaatattcatacaaagtgcca |
152 |
Q |
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| T |
51941598 |
ccatcttatacaca--caaaaataatattaaatattcatacaaagtgcca |
51941551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 44569364 - 44569445
Alignment:
| Q |
69 |
gagtgatgataggtaaacacacataggtggcataccatcttatacacac-tcaaaaataatattaaatattcatacaaagtg |
149 |
Q |
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| T |
44569364 |
gagtgatgataggtatacatacataggtggcatattaccttatacacacttcaaaaataatattaaatactcatacaaagtg |
44569445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 376
Target Start/End: Original strand, 44569464 - 44569635
Alignment:
| Q |
200 |
tctcagttctatcccatcctccctttctcttttctaagtctgtttcattccctctcttgctgccttctctatacgtctctt-ccgatgaccgtccaccgt |
298 |
Q |
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| T |
44569464 |
tctcagttctctctcatcctccctttctctcttccacgtct-----attccctctctagctgccatctctacacatctctttccggttaccgtccaccgg |
44569558 |
T |
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| Q |
299 |
accaacggcgataacaccactgactatcaattattctcctcccttcatcaccgaccactactgtcctctaccttcatc |
376 |
Q |
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| T |
44569559 |
acgg-cggcgacaaccccattgaccgtcaatcattctcctcccttcatcaccgaccaccaccgtcctcttcctccatc |
44569635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 8004867 - 8004819
Alignment:
| Q |
57 |
taaaagaaaaaagagtgatgataggtaaacacacataggtggcatacca |
105 |
Q |
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| T |
8004867 |
taaaaaaaaaaagagtgatgataggtaaacacccataggtggcatacca |
8004819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 5197652 - 5197613
Alignment:
| Q |
66 |
aaagagtgatgataggtaaacacacataggtggcatacca |
105 |
Q |
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| T |
5197652 |
aaagagtgatgataggtaaacactcataggtggcatacca |
5197613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 15027827 - 15027884
Alignment:
| Q |
72 |
tgatgataggtaaacacacataggtggcataccatcttat--acacactcaaaaataa |
127 |
Q |
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| T |
15027827 |
tgatgatagataaacacacataggtggcatatcaccttatacacacactcaaaaataa |
15027884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 1176667 - 1176632
Alignment:
| Q |
70 |
agtgatgataggtaaacacacataggtggcatacca |
105 |
Q |
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| T |
1176667 |
agtgatgataggtaaacacccataggtggcatacca |
1176632 |
T |
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