View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_61 (Length: 383)

Name: NF1358_high_61
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_61
NF1358_high_61
[»] chr4 (10 HSPs)
chr4 (11-315)||(38916583-38916887)
chr4 (116-201)||(17524202-17524287)
chr4 (124-201)||(49984136-49984213)
chr4 (124-201)||(11306591-11306668)
chr4 (124-196)||(45505397-45505469)
chr4 (124-201)||(31143736-31143813)
chr4 (124-196)||(4592693-4592765)
chr4 (113-174)||(4592403-4592464)
chr4 (124-205)||(49983787-49983868)
chr4 (124-196)||(12292892-12292964)
[»] chr3 (5 HSPs)
chr3 (38-166)||(31527967-31528095)
chr3 (131-196)||(33241849-33241914)
chr3 (123-196)||(37285884-37285957)
chr3 (113-174)||(30548058-30548121)
chr3 (127-207)||(33419882-33419962)
[»] chr8 (11 HSPs)
chr8 (101-196)||(3015996-3016091)
chr8 (124-195)||(18935386-18935457)
chr8 (54-129)||(2352166-2352241)
chr8 (63-162)||(3111674-3111772)
chr8 (122-196)||(16049813-16049887)
chr8 (124-205)||(18429436-18429517)
chr8 (113-181)||(7644797-7644865)
chr8 (124-196)||(9710219-9710291)
chr8 (113-196)||(18548541-18548624)
chr8 (127-205)||(4623441-4623519)
chr8 (124-196)||(7535591-7535663)
[»] chr1 (14 HSPs)
chr1 (21-202)||(40744048-40744226)
chr1 (124-196)||(48171445-48171517)
chr1 (127-196)||(48171777-48171846)
chr1 (124-200)||(40743901-40743976)
chr1 (113-196)||(33460212-33460295)
chr1 (124-201)||(25622606-25622683)
chr1 (80-154)||(16496564-16496637)
chr1 (124-202)||(31872937-31873014)
chr1 (124-202)||(42604967-42605045)
chr1 (124-201)||(33459893-33459970)
chr1 (125-201)||(8718535-8718611)
chr1 (140-196)||(14419823-14419879)
chr1 (140-212)||(18519304-18519376)
chr1 (124-196)||(31872711-31872783)
[»] chr2 (13 HSPs)
chr2 (66-194)||(10307537-10307663)
chr2 (124-201)||(26845519-26845596)
chr2 (44-196)||(36121956-36122106)
chr2 (124-196)||(43531931-43532002)
chr2 (124-203)||(43971851-43971930)
chr2 (124-201)||(3217283-3217360)
chr2 (124-201)||(15988587-15988663)
chr2 (113-196)||(29526599-29526681)
chr2 (122-201)||(32622216-32622295)
chr2 (124-205)||(14473867-14473948)
chr2 (81-201)||(43532066-43532187)
chr2 (160-204)||(1352827-1352871)
chr2 (130-174)||(3217498-3217542)
[»] scaffold0548 (1 HSPs)
scaffold0548 (124-201)||(3369-3446)
[»] chr7 (3 HSPs)
chr7 (124-213)||(24188207-24188296)
chr7 (124-201)||(22566301-22566378)
chr7 (128-196)||(7460883-7460951)
[»] chr6 (6 HSPs)
chr6 (124-180)||(22793320-22793376)
chr6 (124-175)||(6611635-6611686)
chr6 (125-196)||(22793606-22793677)
chr6 (124-174)||(17342913-17342963)
chr6 (124-210)||(34829893-34829979)
chr6 (124-180)||(29674867-29674923)
[»] chr5 (1 HSPs)
chr5 (125-196)||(25508143-25508214)
[»] scaffold0015 (1 HSPs)
scaffold0015 (128-201)||(47417-47490)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 38916887 - 38916583
Alignment:
Q  11 cagagacgcaacgtggataactttgcagggtgccacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916887 cagagacgcaacgtggataactttgcagggtgccacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcag 38916788  T
Q  111 tgacgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaattaaa 210  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916787 tgacgtaagagatcaacttgaaactttctaaacgtaggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaattaaa 38916688  T
Q  211 tgaatagttaaattgagagcaagtaccagcctctctccaccaaggtgcaccatccatgacgcatagtgatgcttattcattttcagattcttgattgatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916687 tgaatagttaaattgagagcaagtaccagcctctctccaccaaggtgcaccatccatgacgcatagtgatgcttattcattttcagattcttgattgatg 38916588  T
Q  311 acatt 315  Q
    |||||    
T  38916587 acatt 38916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 17524287 - 17524202
Alignment:
Q  116 taagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||| ||||||||||||||||  ||||||| ||||||||| ||||| ||||||||||| ||||| | | ||||||||||| ||||    
T  17524287 taagagatcaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcc 17524202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 49984136 - 49984213
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| || |||||||||||||||||||||||| ||||| | | ||||||||||| ||||    
T  49984136 caacttgaaacttttaaaacataaggaaccaacatgaaacctaaaataaacataagggatcaaacatgcaattaagcc 49984213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 11306591 - 11306668
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| ||||||||| ||||| ||||||||||| ||||| | | ||||||||||| ||||    
T  11306591 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcc 11306668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 45505397 - 45505469
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||||||  ||||||| ||||||||| ||||| ||||||||||| ||||| | | |||||||||||    
T  45505397 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaatt 45505469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 31143736 - 31143813
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    |||||| |||||||  ||||||| |||| ||||||||||||||||||||||   ||| ||| ||||||||||| ||||    
T  31143736 caacttaaaacttttaaaacataagggatcaacatgaaacctaaaataaacaccagggaccaaacatgcaattaagcc 31143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 4592693 - 4592765
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||| |||||||  ||||||| | ||||||| | ||||||||||||||| ||||| ||| |||||||||||    
T  4592693 caacttaaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagggaccaaacatgcaatt 4592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 4592464 - 4592403
Alignment:
Q  113 acgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaac 174  Q
    |||||||| || |||||||||||||  ||||||| ||||||||| | ||||||||| |||||    
T  4592464 acgtaagagattaacttgaaacttttaaaacataagggaccaacttaaaacctaaattaaac 4592403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 49983868 - 49983787
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaa 205  Q
    |||||| |||||||  |||||||  |||||||| ||||| ||||||||| |  |||| ||| ||||||||||| ||||||||    
T  49983868 caacttcaaacttttaaaacataaaggaccaacttgaaatctaaaataagcacaagggaccaaacatgcaattaagccaaaa 49983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 12292964 - 12292892
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||||||  ||||| | ||||||||| | ||||||||||||||| ||||| |   |||||||||||    
T  12292964 caacttgaaacttttaaaacaaaagggaccaactttaaacctaaaataaacataagggattaaacatgcaatt 12292892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 31528095 - 31527967
Alignment:
Q  38 gggtgccacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaacttt 137  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||||||| |||||| |||||||||||||||| | |||||  | ||||||||||||||    
T  31528095 gggtgccatgtgaatgatttagacacagttaactcaaaatttgacggaaatgatgaatttatgttgacatcagtaatgtaaggaaccaacttgaaacttt 31527996  T
Q  138 ctaaacataggggaccaacatgaaaccta 166  Q
     ||||| |||| ||||||| |||||||||    
T  31527995 ttaaacgtaggtgaccaacttgaaaccta 31527967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 33241914 - 33241849
Alignment:
Q  131 aaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||  ||||||| |||| |||| ||||||||||||||||||||||| ||| | |||||||||    
T  33241914 aaacttttaaaacataagggaacaacttgaaacctaaaataaacttaagggaccaaccatgcaatt 33241849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 37285884 - 37285957
Alignment:
Q  123 tcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||||||||||  ||| ||| ||||||||| | ||||||||||||||| || |||||  |||||||||||    
T  37285884 tcaacttgaaacttttaaaatataagggaccaacttaaaacctaaaataaacatagggaactaaacatgcaatt 37285957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 30548058 - 30548121
Alignment:
Q  113 acgtaagatatcaactt--gaaactttctaaacataggggaccaacatgaaacctaaaataaac 174  Q
    |||||||| ||||||||  ||||||||  ||| ||| ||||||||| |||||||||||||||||    
T  30548058 acgtaagagatcaacttttgaaacttttaaaagatatgggaccaacttgaaacctaaaataaac 30548121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 33419882 - 33419962
Alignment:
Q  127 cttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaatt 207  Q
    |||||||||||  ||||||| ||||||||| | |||  |||||||||| ||||| | | ||||||||||| |||| |||||    
T  33419882 cttgaaacttttaaaacataagggaccaacttaaaaagtaaaataaacataagggatcaaacatgcaattaagcctaaatt 33419962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 3015996 - 3016091
Alignment:
Q  101 ttgacatcagtgacgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||||||||| ||||  |||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  3015996 ttgacatcagtgacataagggatcaacttgaaactttttaaagatgggggaccaacttgaaacctaaaataaacttaagggaccaaacatgcaatt 3016091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 18935386 - 18935457
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaat 195  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  18935386 caacttgaaacttttaaaacataagggaccaacatgaaacctaaaataaacataagggaccaaacatgcaat 18935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 2352241 - 2352166
Alignment:
Q  54 ttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaactt 129  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| || ||||||| || |||||||  ||||||||    
T  2352241 ttttagacagagttaactcaaaatttgacggaaatgatgaacttttgctgacatcggttacgtaagggatcaactt 2352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 3111674 - 3111772
Alignment:
Q  63 gagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaa 162  Q
    ||||||||| |||||||||| |||||||||||| |||   ||||||||| | |||||| | |||||||||||||| ||||| |||||||||||| |||||    
T  3111674 gagttaacttaaaatttgacagaaaggatgaacgtattcagacatcagtaatgtaaga-accaacttgaaactttttaaacttaggggaccaacttgaaa 3111772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 16049813 - 16049887
Alignment:
Q  122 atcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| ||||||||||| ||||| | | |||||||||||    
T  16049813 atcaacttaaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaatt 16049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 18429517 - 18429436
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaa 205  Q
    ||||||||||||||  ||| ||| ||||||||| ||||| ||||||||||| ||||  | | ||||||||||| ||||||||    
T  18429517 caacttgaaacttttaaaatataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaagccaaaa 18429436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 7644865 - 7644797
Alignment:
Q  113 acgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaagga 181  Q
    |||||||  ||||||||||||||||  ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  7644865 acgtaagggatcaacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacataagga 7644797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 9710291 - 9710219
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||||||  ||||||| ||||||||| | ||| ||||||||||| ||||| | | |||||||||||    
T  9710291 caacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaatt 9710219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 18548624 - 18548541
Alignment:
Q  113 acgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||| | |||||| |||||||  |||||||  | |||||| | ||||||||||||||| ||||||| | |||||||||||    
T  18548624 acgtaagaaaccaacttaaaacttttaaaacataaagtaccaacttaaaacctaaaataaacataaggaatcaaacatgcaatt 18548541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 4623441 - 4623519
Alignment:
Q  127 cttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaa 205  Q
    |||||||||||  |||||||  ||| |||| ||||| ||||||||||| ||||| | | ||||||||||| ||||||||    
T  4623441 cttgaaacttttaaaacataaaggatcaacttgaaaactaaaataaacataagggatcaaacatgcaattaagccaaaa 4623519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 7535591 - 7535663
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||| ||||  ||||||| ||| ||||| ||||||| ||||||||  ||||||| | |||||||||||    
T  7535591 caacttgaatcttttaaaacataaggggccaacttgaaaccaaaaataaatataaggaatcaaacatgcaatt 7535663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 40744048 - 40744226
Alignment:
Q  21 acgtggataactttgcagggtgccacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaaga 120  Q
    ||||||||||||||| || ||||||| || | ||||| | |||||||| |||||||| |||||||||||| |||||||||||||||||| | |||||||     
T  40744048 acgtggataactttg-agagtgccacatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgtaag- 40744145  T
Q  121 tatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcca 202  Q
     | ||||||||| |||| |||||  | | ||||||| ||||||||||||||||| || ||  || || ||||||||||||||    
T  40744146 gaacaacttgaagctttttaaac-gaagagaccaacttgaaacctaaaataaacgtatgggtccaaaaatgcaatttagcca 40744226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 48171517 - 48171445
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||||||| ||||| | | |||||||||||    
T  48171517 caacttgaaacttttaaaacataagggaccaacctgaaacctaaaataaacataagggatcaaacatgcaatt 48171445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 48171777 - 48171846
Alignment:
Q  127 cttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||||||  |||||||  |||||||| ||||||||||||||||| ||||| ||| |||||||||||    
T  48171777 cttgaaacttttaaaacataaaggaccaacttgaaacctaaaataaacataagggaccaaacatgcaatt 48171846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 40743976 - 40743901
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagc 200  Q
    |||||||||||||||||||  |||||||||||| | |||| |||| ||||| ||||| ||| |||||||||||||||    
T  40743976 caacttgaaactttctaaatgtaggggaccaacttaaaacgtaaattaaacgtaagg-accaaacatgcaatttagc 40743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 33460212 - 33460295
Alignment:
Q  113 acgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||  ||||||||||||||||  ||||||| ||||||||| ||||| ||||||||||| ||||  | | |||||||||||    
T  33460212 acgtaagggatcaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaatt 33460295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 25622683 - 25622606
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||| ||||||| | ||| ||  ||||||||||||||||| ||||| ||  ||||||||||| ||||    
T  25622683 caacttgaaactttcaaaacataagagactaatttgaaacctaaaataaacataagggactaaacatgcaattaagcc 25622606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 16496564 - 16496637
Alignment:
Q  80 gacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaactttctaaacataggggacca 154  Q
    |||||||||||||||||||||||||| ||| | | |||||| |||||| | ||||||| ||||| || |||||||    
T  16496564 gacggaaaggatgaacttatgttgacttcaataatgtaagagatcaacat-aaactttttaaacgtaagggacca 16496637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 31872937 - 31873014
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcca 202  Q
    ||||||||||||||  |||||||||| |||||| ||||| ||||||||||| ||||| | | || |||||||| |||||    
T  31872937 caacttgaaacttttaaaacataggg-accaacttgaaaactaaaataaacataagggatcaaatatgcaattaagcca 31873014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 42604967 - 42605045
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcca 202  Q
    ||||||||||||||  |||| || ||| ||||| ||||| ||||||||||| ||||| | | ||||||||||| |||||    
T  42604967 caacttgaaacttttaaaacctaagggtccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcca 42605045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 33459970 - 33459893
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| ||||| ||| ||||| ||||||||||| ||||| | | | ||||||||| ||||    
T  33459970 caacttgaaacttttaaaacataagggactaacttgaaaactaaaataaacataagggatcaagcatgcaattaagcc 33459893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 8718535 - 8718611
Alignment:
Q  125 aacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    |||||||||||||  ||| ||| ||||||||| | ||||||||||||||| || || | | ||||||||||| ||||    
T  8718535 aacttgaaacttttaaaaaataagggaccaacttaaaacctaaaataaacatatgggatcaaacatgcaattaagcc 8718611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 14419879 - 14419823
Alignment:
Q  140 aaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||  || ||||||||    
T  14419879 aaacataagggaccaacttaaaacctaaaataaacataaggaactaaagatgcaatt 14419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 18519376 - 18519304
Alignment:
Q  140 aaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaattaaatg 212  Q
    ||||||| ||||||||| | ||| ||||||||||| ||||| |  |||||||||||| |||||| || |||||    
T  18519376 aaacataagggaccaacttaaaaactaaaataaacataaggtattgaacatgcaattaagccaagataaaatg 18519304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 31872783 - 31872711
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||||||  |||| || ||||||||| | ||| ||||||||||| ||||| | | |||||||||||    
T  31872783 caacttgaaacttttaaaacgtaagggaccaactttaaaactaaaataaacataagggatcaaacatgcaatt 31872711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 10307537 - 10307663
Alignment:
Q  66 ttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacct 165  Q
    |||||| ||||||||| |||||| | ||||||||| |||||||||| |||||||  |||||||||||||||| ||||| ||  |||||||| | |||| |    
T  10307537 ttaacttaaaatttgatggaaagcacgaacttatgctgacatcagtaacgtaagg-atcaacttgaaactttttaaacgta-aggaccaacttcaaacat 10307634  T
Q  166 aaaataaacttaaggaaccgaacatgcaa 194  Q
    ||||||||| ||||| ||| |||||||||    
T  10307635 aaaataaacataaggcaccaaacatgcaa 10307663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 26845519 - 26845596
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| ||||||||| | ||||||||||||||| ||||| ||| ||||||||||| ||||    
T  26845519 caacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacataagggaccaaacatgcaattcagcc 26845596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 36121956 - 36122106
Alignment:
Q  44 cacgtgaatgttttaggcagagttaactcaaaatttgacggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaactttctaaac 143  Q
    |||||| |||||||||| |||||||||  ||| ||||||  ||||| |||||||||||||||   ||| || ||||| |||||||||||   ||  ||||    
T  36121956 cacgtggatgttttaggtagagttaacg-aaagtttgacataaaggctgaacttatgttgacca-agtaacataagagatcaacttgaatggttagaaac 36122053  T
Q  144 ataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||| ||| ||| |||||||||| |||||| ||||| ||| |||||||||||    
T  36122054 ataggagactaacttgaaacctaatataaacgtaagggaccaaacatgcaatt 36122106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 43532002 - 43531931
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||| ||||| |||||||||| ||||||| ||||||||||||||||| ||||| ||||| |||||||||    
T  43532002 caacttgagacttt-taaacataggagaccaacttgaaacctaaaataaacgtaagggaccgatcatgcaatt 43531931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 43971851 - 43971930
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaa 203  Q
    ||||||||||||||  ||||| | | ||||||| ||||||||||||||||| ||||| ||| ||||||||||| ||||||    
T  43971851 caacttgaaacttttaaaacacatgtgaccaacttgaaacctaaaataaacataagggaccaaacatgcaattaagccaa 43971930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 3217360 - 3217283
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||| ||  ||||||| |||||||||||||||||||| ||| ||  |||| ||| ||||||||||| ||||    
T  3217360 caacttgaaacctttaaaacataagggaccaacatgaaacctaagatatacacaagggaccaaacatgcaattaagcc 3217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 15988587 - 15988663
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| || |||||||||||||| ||||||||| |||||| || ||| ||||||| ||||    
T  15988587 caacttgaaacttttaaaacataagg-accaacatgaaaccgaaaataaacataaggacccaaacctgcaattaagcc 15988663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 29526681 - 29526599
Alignment:
Q  113 acgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||| | ||||||||||||||| ||||||| ||||||||  ||||| ||||||||||| ||| | | | |||||||||||    
T  29526681 acgtaagagaccaacttgaaactttc-aaacataagggaccaaattgaaaactaaaataaacataaaggatccaacatgcaatt 29526599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 32622295 - 32622216
Alignment:
Q  122 atcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||| ||||||||  ||||||| | ||||||| ||||| ||||||||||| ||||| | | ||||||||||| ||||    
T  32622295 atcaactggaaacttttaaaacataagagaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcc 32622216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 14473867 - 14473948
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaa 205  Q
    |||||| |||||||  ||||||| |||||| || ||||||||||||||||| |||||  |  ||||||||| | ||||||||    
T  14473867 caacttaaaacttttaaaacataagggacctacttgaaacctaaaataaacgtaaggggctaaacatgcaactaagccaaaa 14473948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 43532066 - 43532187
Alignment:
Q  81 acggaaaggatgaacttatgttgacatcagtgacgtaagatatcaacttgaaactttctaaacataggggaccaacatgaaacctaaaataaac-ttaag 179  Q
    |||||||||||||||||||| |||||||||| || ||||  | |||| | |||| || ||| | || |||||||   ||||||||||| ||||| ||| |    
T  43532066 acggaaaggatgaacttatgctgacatcagtaacataagggaccaacattaaacattttaatcgtaagggaccagtttgaaacctaaagtaaacgttagg 43532165  T
Q  180 gaaccgaacatgcaatttagcc 201  Q
    | | | ||||||||||||||||    
T  43532166 ggagcaaacatgcaatttagcc 43532187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 1352871 - 1352827
Alignment:
Q  160 aaacctaaaataaacttaaggaaccgaacatgcaatttagccaaa 204  Q
    ||||||||||||||| ||||||| | ||||||||||| |||||||    
T  1352871 aaacctaaaataaacataaggaatcaaacatgcaattaagccaaa 1352827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 3217498 - 3217542
Alignment:
Q  130 gaaactttctaaacataggggaccaacatgaaacctaaaataaac 174  Q
    ||||||||  ||||||||||||||||| |||||||| ||||||||    
T  3217498 gaaacttttaaaacataggggaccaacttgaaacctgaaataaac 3217542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 3369 - 3446
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| ||||||||| ||||| ||||||||||| ||||| | | ||||||||||| ||||    
T  3369 caacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaagcc 3446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 24188207 - 24188296
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaattaaatga 213  Q
    |||||||||||| |  ||||||| ||||||||| |||||||||| |||||| ||||  | | ||||||||||| |||||||| |||||||    
T  24188207 caacttgaaactcttaaaacataagggaccaacttgaaacctaatataaacataagcgatcaaacatgcaattaagccaaaaataaatga 24188296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 22566378 - 22566301
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||||||  ||||||| ||||||||  | ||| ||||||||||| ||||| | | ||||||||||| ||||    
T  22566378 caacttgaaacttttaaaacataagggaccaatttaaaaactaaaataaacataagggatcaaacatgcaattaagcc 22566301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 7460883 - 7460951
Alignment:
Q  128 ttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    ||||||||||  ||||||| | ||||||| ||||| ||||||||||| ||||| | | |||||||||||    
T  7460883 ttgaaacttttaaaacataagtgaccaacttgaaaactaaaataaacataagggatcaaacatgcaatt 7460951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 22793376 - 22793320
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaagg 180  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||||||| |||||    
T  22793376 caacttgaaacttttaaaacataagggaccaacttgaaacctaaaataaacataagg 22793320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 6611686 - 6611635
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaact 175  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||||||||    
T  6611686 caacttgaaacttttaaaacataagggaccaacctgaaacctaaaataaact 6611635  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 22793606 - 22793677
Alignment:
Q  125 aacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||||||||  |||| || ||||||||| ||||||||||||||||| ||||| | | |||||||||||    
T  22793606 aacttgaaacttttaaaacgtaagggaccaacttgaaacctaaaataaacataagggatcaaacatgcaatt 22793677  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 17342963 - 17342913
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaac 174  Q
    |||||||||| |||  ||||||| ||||||||| |||||||||||||||||    
T  17342963 caacttgaaatttttaaaacataagggaccaacttgaaacctaaaataaac 17342913  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 34829893 - 34829979
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagccaaaattaaa 210  Q
    |||| |||||||||  ||||||| | ||||||| | ||||||||||||||| ||||  | | ||||||||||| || ||||||||||    
T  34829893 caacatgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatgcaattaagacaaaattaaa 34829979  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 29674923 - 29674867
Alignment:
Q  124 caacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaagg 180  Q
    ||||||||||||||  ||| ||| ||||||||| ||||||||||| ||||| |||||    
T  29674923 caacttgaaacttttaaaatataagggaccaacttgaaacctaaattaaacataagg 29674867  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 25508143 - 25508214
Alignment:
Q  125 aacttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatt 196  Q
    |||||||||||||  ||||||| |||| |||| | ||||||||||| ||||||||| ||| |||||||||||    
T  25508143 aacttgaaacttttaaaacataagggagcaacttaaaacctaaaatcaacttaagggaccaaacatgcaatt 25508214  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 47417 - 47490
Alignment:
Q  128 ttgaaactttctaaacataggggaccaacatgaaacctaaaataaacttaaggaaccgaacatgcaatttagcc 201  Q
    ||||||||||  ||||||| | ||||||| | ||||||||||||||| ||||| ||| ||||||||||| ||||    
T  47417 ttgaaacttttaaaacataagcgaccaacttaaaacctaaaataaacataagggaccaaacatgcaattaagcc 47490  T

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