View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_65 (Length: 366)
Name: NF1358_high_65
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 44446064 - 44445739
Alignment:
| Q |
30 |
gccacggctacggttctcttcttcagacatagtgtggtttcaaaagataaatggatcaaattaatggtgaatgagaagtgattatggaaatggattgata |
129 |
Q |
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| T |
44446064 |
gccacggctacggttctcttcttcagacatagtgtggtttcaaaagataaatggatcaaattaatggtgaatgagaagtgattatggaaatggattgata |
44445965 |
T |
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| Q |
130 |
tgttgtttggaaaggattagttccctatttataaagtgatgatcatgtaatacttgctggtgaagttctttatttcttggtaggccataattaatgatct |
229 |
Q |
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| T |
44445964 |
tgttgtttggaaaggattagttccctatttataaagtgatgatcatgtaatacttgctggtgaagttctttatttcttggtaggccataattaatgatct |
44445865 |
T |
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| Q |
230 |
tgtggaatataggaaaataatattggccctcctatgctttaagatattttttcacttaaagatgcaaaatgaaatttacttaacttgtttttggggtcac |
329 |
Q |
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| T |
44445864 |
tgtggaatataggaa---aatattggccctcctatgctttaagatattttttcacttaaagatgcaaaatgaaatttactaaacttgtttttggggtcac |
44445768 |
T |
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| Q |
330 |
aatatatatttgagttcaatctctctgctcctc |
362 |
Q |
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| T |
44445767 |
a----atatttgagttcaatctctttggtcctc |
44445739 |
T |
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