View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_66 (Length: 364)

Name: NF1358_high_66
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_66
NF1358_high_66
[»] chr5 (6 HSPs)
chr5 (29-267)||(36912930-36913168)
chr5 (156-267)||(17591322-17591432)
chr5 (164-267)||(36912253-36912353)
chr5 (180-267)||(17590588-17590675)
chr5 (174-223)||(35107586-35107635)
chr5 (209-262)||(39086797-39086850)
[»] chr7 (3 HSPs)
chr7 (156-267)||(14735356-14735467)
chr7 (170-267)||(14736108-14736205)
chr7 (164-224)||(39045219-39045279)
[»] chr4 (1 HSPs)
chr4 (157-267)||(19129525-19129635)
[»] chr3 (1 HSPs)
chr3 (221-267)||(32355928-32355974)
[»] scaffold1052 (1 HSPs)
scaffold1052 (221-260)||(394-433)
[»] chr2 (1 HSPs)
chr2 (221-258)||(6182156-6182193)
[»] chr8 (1 HSPs)
chr8 (208-253)||(41707370-41707415)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 36913168 - 36912930
Alignment:
Q  29 actagtaacatacatgcaactacgttattgtaaactaatgctaacatttaacaaggtgtagattgtggatgtttctaataattatctgtttatgaaatag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36913168 actagtaacatacatgcaactacgttattgtaaactaatgctaacatttaacaaggtgtagattgtggatgtttctaataattatctgtttatgaaatag 36913069  T
Q  129 aaattatcatgttacatgttgtctcttcggtggaatttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36913068 aaattatcatgttacatgttgtctcttcggtggaatttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaaccatttgatttaag 36912969  T
Q  229 aggaacattgatcttatgatagtctcttcacacttgatt 267  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36912968 aggaacattgatcttatgatagtctcttcacacttgatt 36912930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 17591432 - 17591322
Alignment:
Q  156 cggtggaatttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctct 255  Q
    |||||| |||||| ||||||||  |||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  17591432 cggtgggatttagcatgggaaagactattttttc-caccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttataatagtctct 17591334  T
Q  256 tcacacttgatt 267  Q
    ||| ||||||||    
T  17591333 tcaaacttgatt 17591322  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 36912253 - 36912353
Alignment:
Q  164 tttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctcttcacactt 263  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  36912253 tttagcatgggaaaggctattttttcccaccatgggaaagttgtttttgaaccatttgatttaa---gaacattgatcttatgatagtctcttcacactt 36912349  T
Q  264 gatt 267  Q
    ||||    
T  36912350 gatt 36912353  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 17590588 - 17590675
Alignment:
Q  180 ctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctcttcacacttgatt 267  Q
    ||||||||||  ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17590588 ctattttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataatctcttcacacttgatt 17590675  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 35107635 - 35107586
Alignment:
Q  174 gaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgat 223  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  35107635 gaaatgctattttttcccaccatagaaaagttgtttttgaaccatttgat 35107586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 39086797 - 39086850
Alignment:
Q  209 tttgaacaatttgatttaagaggaacattgatcttatgatagtctcttcacact 262  Q
    ||||||| |||||||  ||||| |||||||||||||| |||| |||||||||||    
T  39086797 tttgaaccatttgataaaagagaaacattgatcttatcatagactcttcacact 39086850  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 14735356 - 14735467
Alignment:
Q  156 cggtggaatttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctct 255  Q
    ||||||| ||||| ||||||||  |||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14735356 cggtggagtttagcatgggaaagactattttttcccaccatggaaaaattgtttttgaatcatttgatttaagaggaacattgatcttatgatagtctct 14735455  T
Q  256 tcacacttgatt 267  Q
    ||||||||||||    
T  14735456 tcacacttgatt 14735467  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 14736205 - 14736108
Alignment:
Q  170 atgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctcttcacacttgatt 267  Q
    |||||||| |||||||||||  ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14736205 atgggaaaggctattttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataatctcttcacacttgatt 14736108  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 39045279 - 39045219
Alignment:
Q  164 tttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatt 224  Q
    ||||| |||||||| |||| |||||| ||||||||||||||||||||| |||  |||||||    
T  39045279 tttagcatgggaaaggctactttttcccaccatggaaaagttgtttttcaaccctttgatt 39045219  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 19129525 - 19129635
Alignment:
Q  157 ggtggaatttagtatgggaaatgctattttttctcaccatggaaaagttgtttttgaacaatttgatttaagaggaacattgatcttatgatagtctctt 256  Q
    |||||| ||||| |||  ||| |||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19129525 ggtggagtttagcatgaaaaaggctattttctcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctctt 19129624  T
Q  257 cacacttgatt 267  Q
    |||||||||||    
T  19129625 cacacttgatt 19129635  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 32355928 - 32355974
Alignment:
Q  221 gatttaagaggaacattgatcttatgatagtctcttcacacttgatt 267  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  32355928 gatttaagatgaacattgatcttatgatagtctcttcacactagatt 32355974  T

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Target: scaffold1052 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 394 - 433
Alignment:
Q  221 gatttaagaggaacattgatcttatgatagtctcttcaca 260  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  394 gatttaagatgaacattgatcttatgatagtctcttcaca 433  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 6182156 - 6182193
Alignment:
Q  221 gatttaagaggaacattgatcttatgatagtctcttca 258  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  6182156 gatttaagatgaacattgatcttatgatagtctcttca 6182193  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 41707415 - 41707370
Alignment:
Q  208 ttttgaacaatttgatttaagaggaacattgatcttatgatagtct 253  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||||||    
T  41707415 tttttaaccatttgatttaagaggaacattaatcttataatagtct 41707370  T

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