View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_7 (Length: 666)

Name: NF1358_high_7
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_7
NF1358_high_7
[»] chr2 (10 HSPs)
chr2 (184-592)||(15360728-15361133)
chr2 (442-573)||(2063137-2063269)
chr2 (421-534)||(15126130-15126244)
chr2 (445-573)||(40470651-40470780)
chr2 (480-573)||(25504579-25504670)
chr2 (94-145)||(15360640-15360688)
chr2 (444-476)||(13699066-13699098)
chr2 (444-476)||(25504689-25504721)
chr2 (444-479)||(7696248-7696283)
chr2 (444-479)||(24308513-24308548)
[»] chr5 (11 HSPs)
chr5 (420-572)||(27713311-27713462)
chr5 (423-542)||(22675034-22675154)
chr5 (458-559)||(4941346-4941446)
chr5 (444-577)||(24071948-24072080)
chr5 (480-573)||(8731237-8731328)
chr5 (444-476)||(8731186-8731218)
chr5 (534-593)||(25992352-25992411)
chr5 (518-593)||(33258560-33258634)
chr5 (444-478)||(7682840-7682874)
chr5 (444-480)||(14302202-14302238)
chr5 (444-480)||(30097619-30097655)
[»] chr4 (7 HSPs)
chr4 (442-585)||(28967134-28967277)
chr4 (441-507)||(12296442-12296508)
chr4 (431-507)||(46487528-46487604)
chr4 (512-571)||(38930118-38930177)
chr4 (443-507)||(27314451-27314515)
chr4 (444-479)||(43373866-43373901)
chr4 (547-593)||(22810844-22810889)
[»] chr6 (5 HSPs)
chr6 (420-527)||(13098299-13098406)
chr6 (421-495)||(16180659-16180732)
chr6 (480-585)||(16180535-16180642)
chr6 (444-479)||(32935102-32935137)
chr6 (445-479)||(17278261-17278295)
[»] scaffold0499 (1 HSPs)
scaffold0499 (420-527)||(6804-6911)
[»] chr7 (8 HSPs)
chr7 (439-542)||(25438412-25438517)
chr7 (420-527)||(48058394-48058503)
chr7 (444-507)||(9107413-9107475)
chr7 (444-479)||(28534288-28534323)
chr7 (444-479)||(23983491-23983526)
chr7 (499-573)||(25438673-25438748)
chr7 (530-593)||(48058343-48058406)
chr7 (420-458)||(47456819-47456857)
[»] chr1 (6 HSPs)
chr1 (420-563)||(19598882-19599031)
chr1 (444-507)||(16577546-16577608)
chr1 (444-479)||(37200388-37200423)
chr1 (521-572)||(50588964-50589015)
chr1 (531-577)||(17033942-17033988)
chr1 (444-477)||(38548838-38548871)
[»] chr8 (3 HSPs)
chr8 (518-571)||(8862314-8862367)
chr8 (445-479)||(25184919-25184953)
chr8 (444-479)||(30235891-30235926)
[»] chr3 (6 HSPs)
chr3 (458-573)||(47945974-47946090)
chr3 (444-479)||(1652650-1652685)
chr3 (444-475)||(12086528-12086559)
chr3 (420-479)||(25594308-25594366)
chr3 (444-479)||(27399231-27399266)
chr3 (443-491)||(40689505-40689552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (518-568)||(1347-1397)
[»] scaffold0063 (1 HSPs)
scaffold0063 (548-592)||(58493-58537)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 184 - 592
Target Start/End: Original strand, 15360728 - 15361133
Alignment:
Q  184 ctcgttttctccagagcattttatgagtttgaattacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggtactaacattgt 283  Q
    |||||||||| |  |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  15360728 ctcgttttcttccaagcaatttatgagtttgaatcacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggta---acattgt 15360824  T
Q  284 acaggttttatggagtagatgaccatttagtnnnnnnnnnnnnncttagaagattaatgtagtgcatacatctaacataaatgatcacataatataattt 383  Q
    |||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15360825 acaggttttatggagtagatgaccatttagtaaaaaacaaaaaacttagaagattaatttagtgcatacatctaacataaatgatcacatagtataattt 15360924  T
Q  384 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15360925 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttcgtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 15361024  T
Q  484 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttca 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  15361025 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttattttttgggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttca 15361124  T
Q  584 ccagtctct 592  Q
    |||||||||    
T  15361125 ccagtctct 15361133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 442 - 573
Target Start/End: Original strand, 2063137 - 2063269
Alignment:
Q  442 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt---tgttatggtgtttatttttcggg 538  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| || |   | |||||||||||||||||||||    
T  2063137 gtttttaggtggtgatgtttattttggcgggtgttgtcaggtagggtttgactaggtg--ttgtgtgtagggatgtcttttatggtgtttatttttcggg 2063234  T
Q  539 tgtttcgtttatatacggcgcctttcgtttgtatt 573  Q
    |||||||  |||||||||| |||||||||||||||    
T  2063235 tgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 421 - 534
Target Start/End: Complemental strand, 15126244 - 15126130
Alignment:
Q  421 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt-gtt 519  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  15126244 ggtggtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgtcaggtaggatttgactaggtgttttgtgtgtaagggttcttt 15126145  T
Q  520 atggtgtttattttt 534  Q
    |||| ||||||||||    
T  15126144 atggggtttattttt 15126130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 445 - 573
Target Start/End: Original strand, 40470651 - 40470780
Alignment:
Q  445 tttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgttt 543  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||| |||||||||||| |||||||||| || ||||| | ||| |||||  ||||||     
T  40470651 tttaggtggtgatgtttattttggtgactgttgtcaggttggatttaactaggtgttttatgtgtaagggttttttatgttttttttttttaaggtgttc 40470750  T
Q  544 cgtttatatacggcgcctttcgtttgtatt 573  Q
    ||  ||||||| | | ||||||||||||||    
T  40470751 cgcatatatacagtgtctttcgtttgtatt 40470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 573
Target Start/End: Complemental strand, 25504670 - 25504579
Alignment:
Q  480 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 573  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  25504670 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 15360640 - 15360688
Alignment:
Q  94 gaaccaagattgcacctatgatttattattcttctctaatttggtttccaac 145  Q
    ||||||||||||||||||||||   ||||||||||||||||||| |||||||    
T  15360640 gaaccaagattgcacctatgat---ttattcttctctaatttgggttccaac 15360688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 476
Target Start/End: Complemental strand, 13699098 - 13699066
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgtt 476  Q
    |||||||||||||||||||||||||||||||||    
T  13699098 ttttaggtggtgatgtttattttggtgggtgtt 13699066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 476
Target Start/End: Complemental strand, 25504721 - 25504689
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgtt 476  Q
    |||||||||||||||||||||||||||||||||    
T  25504721 ttttaggtggtgatgtttattttggtgggtgtt 25504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 7696248 - 7696283
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||||||||||||||| |||||||||||||||||||    
T  7696248 ttttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 24308548 - 24308513
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24308548 ttttaggtgatgatgtttattttggtgggtgttgtc 24308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 420 - 572
Target Start/End: Original strand, 27713311 - 27713462
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 519  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |  || ||    
T  27713311 tggtggtttcgtgaaggggtttgtttttaggcggtgatgtttattttggggggtgttgtcaggtagggtttgactaggtg-tttgtgtgtaggatttttt 27713409  T
Q  520 atggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 572  Q
    |||| |||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  27713410 atggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 423 - 542
Target Start/End: Complemental strand, 22675154 - 22675034
Alignment:
Q  423 tggtttggtgaagggg-tatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgtta 520  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||| || |||    
T  22675154 tggttttgtgaagggggtctgtttttaggtggtgatgtttattttggtgggtg-tgtcaggtatggtttgactaggagttttgtgtgtaggggtttttta 22675056  T
Q  521 tggtgtttatttttcgggtgtt 542  Q
    ||||| |||||||| |||||||    
T  22675055 tggtgattattttttgggtgtt 22675034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 559
Target Start/End: Complemental strand, 4941446 - 4941346
Alignment:
Q  458 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggc 557  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |  || |||||||||||||||||| |||||| ||| ||||||||||    
T  4941446 gtttattttggtgggtgt-gtcaggtagggtttgattaggtgttttgtgtgtaggattttttatggtgtttatttttcaggtgttccgtctatatacggc 4941348  T
Q  558 gc 559  Q
    ||    
T  4941347 gc 4941346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 444 - 577
Target Start/End: Complemental strand, 24072080 - 24071948
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt-tgttatggtgtttatttttcgggtgtt 542  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||  | | || | ||||| |||||| ||||||||||||    
T  24072080 ttttatgtggtgatgtttattttggtgggtgttg-aaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgttta-ttttcgggtgtt 24071983  T
Q  543 tcgtttatatacggcgcctttcgtttgtattatct 577  Q
     ||  ||||||||||||| || |||||||||||||    
T  24071982 ccgcctatatacggcgcccttagtttgtattatct 24071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 573
Target Start/End: Original strand, 8731237 - 8731328
Alignment:
Q  480 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 573  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  8731237 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 476
Target Start/End: Original strand, 8731186 - 8731218
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgtt 476  Q
    |||||||||||||||||||||||||||||||||    
T  8731186 ttttaggtggtgatgtttattttggtgggtgtt 8731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 25992352 - 25992411
Alignment:
Q  534 tcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 593  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||  ||||||| |||||||    
T  25992352 tcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 593
Target Start/End: Complemental strand, 33258634 - 33258560
Alignment:
Q  518 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 593  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||  ||||||||  | |||||||| |||||||    
T  33258634 ttatggtgtttatttt-cgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 478
Target Start/End: Original strand, 7682840 - 7682874
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgt 478  Q
    |||||||||||||||| ||||||||||||||||||    
T  7682840 ttttaggtggtgatgtgtattttggtgggtgttgt 7682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 14302238 - 14302202
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtca 480  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14302238 ttttaggtggtgacgtgtattttggtgggtgttgtca 14302202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 30097619 - 30097655
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtca 480  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30097619 ttttaggtggtgacgtgtattttggtgggtgttgtca 30097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 442 - 585
Target Start/End: Original strand, 28967134 - 28967277
Alignment:
Q  442 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtg 540  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  28967134 gtttttaggtggcgatgtttattttggtgggtgttgtcaggtagggtttgacttggtgttttgtgtgtaagggttttttagggtgttta-ttttcaggtg 28967232  T
Q  541 tttcgtttatatacggcgcctttcgtttgtattatctatttcacc 585  Q
    || ||  ||||||| |||||||||||||||||||||| |||||||    
T  28967233 ttccgcctatatacagcgcctttcgtttgtattatctgtttcacc 28967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 12296442 - 12296508
Alignment:
Q  441 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12296442 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttggctaggtgttgtgtgt 12296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 431 - 507
Target Start/End: Original strand, 46487528 - 46487604
Alignment:
Q  431 tgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 507  Q
    |||||| || |||||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||    
T  46487528 tgaaggagtctgtttttaggaggtgatgtttattttggtgggtattgttaagtagggtttgtctaggtgttgtgtgt 46487604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 571
Target Start/End: Original strand, 38930118 - 38930177
Alignment:
Q  512 gggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 571  Q
    ||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||    
T  38930118 gggtttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 507
Target Start/End: Complemental strand, 27314515 - 27314451
Alignment:
Q  443 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 507  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||||||||| || |||| |||||    
T  27314515 tttttaggtactgatgtttattttagtaggtgttgtctggtagggtttgaccagatgttgtgtgt 27314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 43373901 - 43373866
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43373901 ttttagggggtgatgtttattttggtgggtgttgtc 43373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 22810889 - 22810844
Alignment:
Q  547 ttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 593  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  22810889 ttatatacggcgccttt-gtttgtattctcaatttcaccagtctctg 22810844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 420 - 527
Target Start/End: Complemental strand, 13098406 - 13098299
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 519  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  13098406 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtatgagttttt 13098307  T
Q  520 atggtgtt 527  Q
    ||||||||    
T  13098306 atggtgtt 13098299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 16180732 - 16180659
Alignment:
Q  421 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgacta 495  Q
    ||||||||  ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16180732 ggtggtttcttgaaggggtctgtttt-aggtggtgatgtttattttggtggatgttgtcaggtagggtttgacta 16180659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 585
Target Start/End: Complemental strand, 16180642 - 16180535
Alignment:
Q  480 aggtagggtttgactaggtgttttgtgtgtaagggttgtt-atggtgtttatttttcg-ggtgtttcgtttatatacggcgcctttcgtttgtattatct 577  Q
    ||||||||||||||||| ||||||||||| | | ||| || |||||||||||||||   |||||| || |||||||||| | ||||| ||||||||||||    
T  16180642 aggtagggtttgactagttgttttgtgtgaaggagttttttatggtgtttattttttttggtgttccgcttatatacggtgtctttcatttgtattatct 16180543  T
Q  578 atttcacc 585  Q
     |||||||    
T  16180542 gtttcacc 16180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 32935137 - 32935102
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||||||||||| |||||||||||||||||||||||    
T  32935137 ttttaggtggtggtgtttattttggtgggtgttgtc 32935102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 17278295 - 17278261
Alignment:
Q  445 tttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||||||||| ||||||||||||||||||||||||    
T  17278295 tttaggtggtaatgtttattttggtgggtgttgtc 17278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 420 - 527
Target Start/End: Original strand, 6804 - 6911
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 519  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |     
T  6804 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggttgggtttgactaggtgttttgtgtgtatggatttta 6903  T
Q  520 atggtgtt 527  Q
    ||||||||    
T  6904 atggtgtt 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 439 - 542
Target Start/End: Original strand, 25438412 - 25438517
Alignment:
Q  439 tatgtttttaggtggtgatgtttattttggtggg-tgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcg 536  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||||||    
T  25438412 tatgtttttaggaggtgatgtttattttgggggggtgttgtcaggtagggtttgactaggtgttttgtgtgtaggggctttttatgatgtttacttttcg 25438511  T
Q  537 ggtgtt 542  Q
    ||||||    
T  25438512 ggtgtt 25438517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 527
Target Start/End: Complemental strand, 48058503 - 48058394
Alignment:
Q  420 tggtggtttggtgaaggggtatgttttt--aggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttg 517  Q
    ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  | |||| |||||| | |||||| || ||     
T  48058503 tggtggtttcgagaaggggtctgtttttttaggtggtgatgtttattttggtgggtgttgtcaggtaggactcgactgggtgttctatgtgtagggtttt 48058404  T
Q  518 ttatggtgtt 527  Q
    ||| ||||||    
T  48058403 ttagggtgtt 48058394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 9107413 - 9107475
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 507  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||||| ||||||||| |||||    
T  9107413 ttttaggtggtgatgcttattttggtgggtgttg-aaggtagagtttggctaggtgttgtgtgt 9107475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 28534323 - 28534288
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||||||||||||||||||||||||||||||||    
T  28534323 ttttaggtggtgatgtttattttggtgggtgttgtc 28534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 23983491 - 23983526
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||||||||||| |||||||||||||||||||||||    
T  23983491 ttttaggtggtggtgtttattttggtgggtgttgtc 23983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 573
Target Start/End: Original strand, 25438673 - 25438748
Alignment:
Q  499 gttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 573  Q
    |||||||||||| ||| || |||||||||||| |||||||||||| ||  ||||||||| || | |||||||||||    
T  25438673 gttttgtgtgtaggggctttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 593
Target Start/End: Complemental strand, 48058406 - 48058343
Alignment:
Q  530 tttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 593  Q
    ||||| ||||||| ||  |||||| | ||||||||||||||||| ||||||||||| |||||||    
T  48058406 tttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctg 48058343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 47456857 - 47456819
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatg 458  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  47456857 tggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 420 - 563
Target Start/End: Original strand, 19598882 - 19599031
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac----taggtgttttgtgtg--taagg 513  Q
    ||||||||| |||||||  | | |||||||||||||||||| |||||| |||| ||||||||||||||||||||    |||||||||||||||  | |||    
T  19598882 tggtggtttcgtgaaggaatctatttttaggtggtgatgttcattttgatgggggttgtcaggtagggtttgaccatgtaggtgttttgtgtgcatgagg 19598981  T
Q  514 gttgttatggtgtttatttttcgggtgtttcgtttatatacggcgccttt 563  Q
     || | |||||||||| ||||| |||||| ||  ||||||||||||||||    
T  19598982 tttttcatggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 16577546 - 16577608
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 507  Q
    ||||||||| ||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||    
T  16577546 ttttaggtgatgatgtttattttggtgggtgttg-aaagtagggtatgactagatgttgtgtgt 16577608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 37200388 - 37200423
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37200388 ttttaggtggtgatgtttattttagtgggtgttgtc 37200423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 50589015 - 50588964
Alignment:
Q  521 tggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 572  Q
    ||||||||||| ||| |||||| ||  |||||||||||||||||||||||||    
T  50589015 tggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 577
Target Start/End: Original strand, 17033942 - 17033988
Alignment:
Q  531 ttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatct 577  Q
    |||||||||||| || ||||||||| ||||||| |||||||||||||    
T  17033942 ttttcgggtgttccgcttatatacgacgccttttgtttgtattatct 17033988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 38548871 - 38548838
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttg 477  Q
    |||||||||||||||||||||||||||| |||||    
T  38548871 ttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 8862367 - 8862314
Alignment:
Q  518 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 571  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  8862367 ttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 25184953 - 25184919
Alignment:
Q  445 tttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||||||||||||||||||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtc 25184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 30235926 - 30235891
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30235926 ttttagggggtgatgtttattttggtgggtgttgtc 30235891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 573
Target Start/End: Original strand, 47945974 - 47946090
Alignment:
Q  458 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt---gttatggtgtttatttttcgggtgtttcgtttatatac 554  Q
    ||||||||||||||||| |||||  || ||||||| ||||| ||||||||||| || ||    ||||||| |||||||||| |||||| ||  |||||||    
T  47945974 gtttattttggtgggtg-tgtcatataaggtttgattaggtattttgtgtgtagggtttttctttatggtatttatttttcaggtgttccgcctatatac 47946072  T
Q  555 ggcgcctttcgtttgtatt 573  Q
    | |||| ||||||||||||    
T  47946073 gacgcc-ttcgtttgtatt 47946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Complemental strand, 1652685 - 1652650
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1652685 ttttagggggtgatgtttattttggtgggtgttgtc 1652650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 475
Target Start/End: Original strand, 12086528 - 12086559
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgt 475  Q
    ||||||||||||||||||||||||||||||||    
T  12086528 ttttaggtggtgatgtttattttggtgggtgt 12086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 25594366 - 25594308
Alignment:
Q  420 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| ||||||||||||||    
T  25594366 tggtcgttttgtgaaggagtatgtttt-aggtagtgatgtttattgtggtgggtgttgtc 25594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 27399231 - 27399266
Alignment:
Q  444 ttttaggtggtgatgtttattttggtgggtgttgtc 479  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27399231 ttttaggtgatgatgtttattttggtgggtgttgtc 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 40689552 - 40689505
Alignment:
Q  443 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttg 491  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  40689552 tttttaagtggtgatgtttatttttgtgggtgttg-aaggtagggtttg 40689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 568
Target Start/End: Complemental strand, 1397 - 1347
Alignment:
Q  518 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgttt 568  Q
    |||||||||||||||||||||||||  |  |||||||||||||||| ||||    
T  1397 ttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 592
Target Start/End: Original strand, 58493 - 58537
Alignment:
Q  548 tatatacggcgcctttcgtttgtattatctatttcaccagtctct 592  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||    
T  58493 tatatacggcgccttttgtttctattatctgtttcaccggtctct 58537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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