View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_78 (Length: 342)
Name: NF1358_high_78
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 3342635 - 3342855
Alignment:
| Q |
13 |
aaaagctggatttatttatcaagtgactcttgaatcttgatgtatagctaatattatactacatgttttggaacattattttcttacacatccaccatat |
112 |
Q |
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| T |
3342635 |
aaaagctggatttatttatcaagtgactcttgaatcttgatgtatagctaatattatactacatgttttggaacattattttcttacacatccaccatat |
3342734 |
T |
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| Q |
113 |
caataacaatcctaatatttcacaaccacctatagacaaacataatccataaacatttgaatcccaaacgttaacctctcatcacaatacataaacaaag |
212 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3342735 |
caataacaatcctactatttcaca---acctatagacaaacataatccataaacatttgaatcccaaacgttaacctcttatcacaatacataaacaaag |
3342831 |
T |
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| Q |
213 |
aaagagaattgaagagaggacaaa |
236 |
Q |
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| T |
3342832 |
aaagagaattgaagagaggacaaa |
3342855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 3342898 - 3342986
Alignment:
| Q |
240 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttatcttatatcattccctcttctttt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3342898 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacat-----ttatcttatatcattccctcttctttt |
3342986 |
T |
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