View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_83 (Length: 333)
Name: NF1358_high_83
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_83 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 50580328 - 50580618
Alignment:
| Q |
7 |
tatattatactacataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgc |
106 |
Q |
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| T |
50580328 |
tatattatactacataccttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgc |
50580427 |
T |
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| Q |
107 |
ctttgtaaaagaccaatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50580428 |
ctttgtaaaagaccaatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtt |
50580527 |
T |
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| Q |
207 |
tgttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgccttccct |
297 |
Q |
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| T |
50580528 |
tgttgctcgattcgttctcacaccggttggatatttacgatctctcatattgaaaaagtaccattccttttctcccatctttgccttccct |
50580618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
| Q |
61 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
140 |
Q |
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| T |
11462908 |
tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac |
11462987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 1059453 - 1059176
Alignment:
| Q |
20 |
ataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagac |
119 |
Q |
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| T |
1059453 |
ataccttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaac |
1059354 |
T |
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| Q |
120 |
caatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattc |
219 |
Q |
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| T |
1059353 |
caaagtcttcttcataccaactaattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctatta |
1059254 |
T |
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| Q |
220 |
gttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgccttccct |
297 |
Q |
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| T |
1059253 |
gttctcacacctgttggatatttacgatctcttagactgaagaagtaccattcttttgtacccatcttggccttccct |
1059176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
| Q |
61 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac |
144 |
Q |
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| T |
45059076 |
tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac |
45058993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 32991129 - 32991047
Alignment:
| Q |
208 |
gttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgc |
290 |
Q |
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| T |
32991129 |
gttgctctatttgttctcatacctgttggatattttctatctttctgacaaaaaaagtaccattctttctctcccatctttgc |
32991047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
| Q |
62 |
attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa |
139 |
Q |
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| T |
3893451 |
attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
| Q |
62 |
attcatgcatgacccaattacttttctctcctcgaggagctctgccttt |
110 |
Q |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctaccttt |
10317671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
| Q |
61 |
tattcatgcatgacccaattacttttctc |
89 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31606022 |
tattcatgcatgacccaattacttttctc |
31606050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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