View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_high_85 (Length: 330)

Name: NF1358_high_85
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_high_85
NF1358_high_85
[»] chr3 (31 HSPs)
chr3 (1-113)||(40748661-40748773)
chr3 (239-271)||(16434973-16435005)
chr3 (239-271)||(36005773-36005805)
chr3 (241-271)||(7251291-7251321)
chr3 (190-220)||(40748553-40748583)
chr3 (241-271)||(45252771-45252801)
chr3 (238-271)||(4024320-4024353)
chr3 (243-271)||(4024052-4024080)
chr3 (243-271)||(7181350-7181378)
chr3 (243-271)||(9499506-9499534)
chr3 (243-271)||(9779979-9780007)
chr3 (243-271)||(10220933-10220961)
chr3 (243-271)||(12050401-12050429)
chr3 (243-271)||(14428610-14428638)
chr3 (243-271)||(14428878-14428906)
chr3 (243-271)||(20862466-20862494)
chr3 (243-271)||(21756486-21756514)
chr3 (243-271)||(22103938-22103966)
chr3 (243-271)||(25149131-25149159)
chr3 (243-271)||(26593774-26593802)
chr3 (243-271)||(26806115-26806143)
chr3 (243-271)||(31531420-31531448)
chr3 (243-271)||(33868717-33868745)
chr3 (243-271)||(35868092-35868120)
chr3 (243-271)||(37728713-37728741)
chr3 (243-271)||(43868103-43868131)
chr3 (243-271)||(44543782-44543810)
chr3 (243-271)||(46049995-46050023)
chr3 (243-271)||(50647684-50647712)
chr3 (243-271)||(51284071-51284099)
chr3 (243-271)||(52058985-52059013)
[»] chr8 (26 HSPs)
chr8 (239-271)||(29279191-29279223)
chr8 (241-271)||(18455718-18455748)
chr8 (241-271)||(43653941-43653971)
chr8 (242-271)||(13154197-13154226)
chr8 (241-270)||(38183575-38183604)
chr8 (242-271)||(42885053-42885082)
chr8 (243-271)||(51104-51132)
chr8 (243-271)||(1774342-1774370)
chr8 (243-271)||(2944281-2944309)
chr8 (243-271)||(8251942-8251970)
chr8 (243-271)||(8951437-8951465)
chr8 (234-270)||(9035549-9035585)
chr8 (243-271)||(11798874-11798902)
chr8 (243-271)||(13153928-13153956)
chr8 (243-271)||(17856785-17856813)
chr8 (243-271)||(18754144-18754172)
chr8 (243-271)||(26016569-26016597)
chr8 (243-271)||(28192184-28192212)
chr8 (243-271)||(28572046-28572074)
chr8 (243-271)||(28579639-28579667)
chr8 (243-271)||(29279465-29279493)
chr8 (243-271)||(32675766-32675794)
chr8 (243-271)||(34568490-34568518)
chr8 (243-271)||(39029178-39029206)
chr8 (243-271)||(40530415-40530443)
chr8 (243-271)||(44250859-44250887)
[»] chr4 (25 HSPs)
chr4 (239-271)||(20391446-20391478)
chr4 (239-271)||(55631995-55632027)
chr4 (239-270)||(5743395-5743426)
chr4 (240-271)||(26626011-26626042)
chr4 (242-271)||(32033002-32033031)
chr4 (243-271)||(4035825-4035853)
chr4 (243-271)||(4036094-4036122)
chr4 (243-271)||(4549629-4549657)
chr4 (243-271)||(5375566-5375594)
chr4 (243-271)||(5743668-5743696)
chr4 (243-271)||(9328249-9328277)
chr4 (243-271)||(20747439-20747467)
chr4 (243-271)||(25708420-25708448)
chr4 (243-271)||(29014064-29014092)
chr4 (239-271)||(29520173-29520205)
chr4 (243-271)||(30771528-30771556)
chr4 (243-271)||(33413518-33413546)
chr4 (243-271)||(34273228-34273256)
chr4 (243-271)||(35675929-35675957)
chr4 (243-271)||(44294789-44294817)
chr4 (243-271)||(45742815-45742843)
chr4 (243-271)||(47806860-47806888)
chr4 (240-268)||(50533881-50533909)
chr4 (243-271)||(52977982-52978010)
chr4 (243-271)||(53277194-53277222)
[»] chr2 (22 HSPs)
chr2 (239-271)||(17408303-17408335)
chr2 (236-271)||(7492113-7492148)
chr2 (243-271)||(2438225-2438253)
chr2 (243-271)||(2438494-2438522)
chr2 (243-271)||(7491844-7491872)
chr2 (243-271)||(8716901-8716929)
chr2 (243-271)||(11201683-11201711)
chr2 (239-271)||(13215829-13215861)
chr2 (243-271)||(16108215-16108243)
chr2 (239-271)||(16456608-16456640)
chr2 (243-271)||(20252210-20252238)
chr2 (243-271)||(22182933-22182961)
chr2 (243-271)||(22897660-22897688)
chr2 (243-271)||(27560206-27560234)
chr2 (243-271)||(34062674-34062702)
chr2 (243-271)||(34113795-34113823)
chr2 (243-271)||(34883857-34883885)
chr2 (243-271)||(36131037-36131065)
chr2 (243-271)||(39833739-39833767)
chr2 (243-271)||(40607702-40607730)
chr2 (243-271)||(41450516-41450544)
chr2 (243-271)||(45474351-45474379)
[»] chr1 (30 HSPs)
chr1 (239-271)||(23541975-23542007)
chr1 (240-271)||(36694851-36694882)
chr1 (240-271)||(36710952-36710983)
chr1 (241-271)||(46075876-46075906)
chr1 (243-271)||(943646-943674)
chr1 (243-271)||(1039390-1039418)
chr1 (243-271)||(1046296-1046324)
chr1 (243-271)||(1047992-1048020)
chr1 (243-271)||(4102723-4102751)
chr1 (243-271)||(8104297-8104325)
chr1 (243-271)||(9202245-9202273)
chr1 (243-271)||(11741397-11741425)
chr1 (243-271)||(15811241-15811269)
chr1 (243-271)||(16456636-16456664)
chr1 (243-271)||(23542248-23542276)
chr1 (243-271)||(30290265-30290293)
chr1 (243-271)||(37951958-37951986)
chr1 (243-271)||(38920239-38920267)
chr1 (243-271)||(39362934-39362962)
chr1 (243-271)||(39363203-39363231)
chr1 (243-271)||(39497433-39497461)
chr1 (243-271)||(39497702-39497730)
chr1 (243-271)||(39750121-39750149)
chr1 (243-271)||(44646540-44646568)
chr1 (243-271)||(44649629-44649657)
chr1 (243-271)||(44649898-44649926)
chr1 (243-271)||(45039412-45039440)
chr1 (243-271)||(49907021-49907049)
chr1 (243-271)||(52431183-52431211)
chr1 (243-271)||(52601991-52602019)
[»] scaffold0604 (1 HSPs)
scaffold0604 (241-271)||(3791-3821)
[»] chr7 (19 HSPs)
chr7 (241-271)||(19920561-19920591)
chr7 (243-271)||(20075116-20075144)
chr7 (243-271)||(21295151-21295179)
chr7 (241-269)||(25247701-25247729)
chr7 (243-271)||(26255096-26255124)
chr7 (243-271)||(28060986-28061014)
chr7 (243-271)||(29286046-29286074)
chr7 (243-271)||(32814433-32814461)
chr7 (243-271)||(32872384-32872412)
chr7 (243-271)||(33858875-33858903)
chr7 (243-271)||(36698140-36698168)
chr7 (243-271)||(38428416-38428444)
chr7 (243-271)||(38858298-38858326)
chr7 (243-271)||(39197718-39197746)
chr7 (243-271)||(39871622-39871650)
chr7 (243-271)||(40300230-40300258)
chr7 (243-271)||(41026105-41026133)
chr7 (243-271)||(41252370-41252398)
chr7 (243-271)||(48521029-48521057)
[»] chr6 (14 HSPs)
chr6 (240-270)||(287424-287454)
chr6 (241-271)||(8743186-8743216)
chr6 (241-271)||(9388527-9388557)
chr6 (241-271)||(23398148-23398178)
chr6 (243-271)||(231114-231142)
chr6 (243-271)||(4844400-4844428)
chr6 (243-271)||(9038642-9038670)
chr6 (243-271)||(11847841-11847869)
chr6 (243-271)||(12144047-12144075)
chr6 (243-271)||(30248647-30248675)
chr6 (239-271)||(31091441-31091473)
chr6 (242-270)||(33487832-33487860)
chr6 (243-271)||(34301841-34301869)
chr6 (243-271)||(34741735-34741763)
[»] scaffold0122 (1 HSPs)
scaffold0122 (243-271)||(12065-12093)
[»] scaffold0029 (1 HSPs)
scaffold0029 (243-271)||(51691-51719)
[»] scaffold0025 (1 HSPs)
scaffold0025 (243-271)||(65378-65406)
[»] scaffold0012 (2 HSPs)
scaffold0012 (243-271)||(47640-47668)
scaffold0012 (240-268)||(47912-47940)
[»] scaffold0008 (1 HSPs)
scaffold0008 (243-271)||(259131-259159)
[»] scaffold0002 (1 HSPs)
scaffold0002 (243-271)||(355340-355368)
[»] chr5 (15 HSPs)
chr5 (243-271)||(186367-186395)
chr5 (243-271)||(1265949-1265977)
chr5 (243-271)||(6673237-6673265)
chr5 (243-271)||(7951562-7951590)
chr5 (243-271)||(9020694-9020722)
chr5 (243-271)||(9828393-9828421)
chr5 (243-271)||(9828662-9828690)
chr5 (243-271)||(10734532-10734560)
chr5 (243-271)||(14913648-14913676)
chr5 (243-271)||(16127259-16127287)
chr5 (243-271)||(16440931-16440959)
chr5 (243-271)||(22527692-22527720)
chr5 (243-271)||(26894882-26894910)
chr5 (243-271)||(34662204-34662232)
chr5 (243-271)||(40004418-40004446)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 40748773 - 40748661
Alignment:
Q  1 atgaggtaggatgaaagaagtgtgaaaaaggtcatacatatgaagtgtattgaataaattgaaagtttgatctatttaattaaagtccgaaaaatgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40748773 atgaggtaggatgaaagaagtgtgaaaaaggtcatacatatgaagtgtattgaataaattgaaagtttgatctatttaattaaagtccgaaaaatgttga 40748674  T
Q  101 attatttaaatta 113  Q
    |||||||||||||    
T  40748673 attatttaaatta 40748661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 16434973 - 16435005
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  16434973 aaactactccctccgtccctaattataagaccc 16435005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 36005805 - 36005773
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  36005805 aaactactccctccgtccctaattataagaccc 36005773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 7251321 - 7251291
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  7251321 actactccctccgtccctaattataagaccc 7251291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 40748583 - 40748553
Alignment:
Q  190 tatttaattaaatttgtaatgaaataaacta 220  Q
    |||||||||||||||||||||||||||||||    
T  40748583 tatttaattaaatttgtaatgaaataaacta 40748553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 45252771 - 45252801
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  45252771 actactccctccgtccctaattataagaccc 45252801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 4024353 - 4024320
Alignment:
Q  238 gaaactactccctccgtccctaattataagaccc 271  Q
    |||| |||||||||||||||||||||||||||||    
T  4024353 gaaagtactccctccgtccctaattataagaccc 4024320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 4024052 - 4024080
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4024052 tactccctccgtccctaattataagaccc 4024080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 7181350 - 7181378
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  7181350 tactccctccgtccctaattataagaccc 7181378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 9499534 - 9499506
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9499534 tactccctccgtccctaattataagaccc 9499506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 9779979 - 9780007
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9779979 tactccctccgtccctaattataagaccc 9780007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 10220933 - 10220961
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  10220933 tactccctccgtccctaattataagaccc 10220961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 12050429 - 12050401
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  12050429 tactccctccgtccctaattataagaccc 12050401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 14428610 - 14428638
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  14428610 tactccctccgtccctaattataagaccc 14428638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 14428906 - 14428878
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  14428906 tactccctccgtccctaattataagaccc 14428878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 20862494 - 20862466
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  20862494 tactccctccgtccctaattataagaccc 20862466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 21756486 - 21756514
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  21756486 tactccctccgtccctaattataagaccc 21756514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 22103966 - 22103938
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  22103966 tactccctccgtccctaattataagaccc 22103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 25149159 - 25149131
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  25149159 tactccctccgtccctaattataagaccc 25149131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 26593802 - 26593774
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  26593802 tactccctccgtccctaattataagaccc 26593774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 26806115 - 26806143
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  26806115 tactccctccgtccctaattataagaccc 26806143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 31531448 - 31531420
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  31531448 tactccctccgtccctaattataagaccc 31531420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 33868745 - 33868717
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  33868745 tactccctccgtccctaattataagaccc 33868717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 35868120 - 35868092
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  35868120 tactccctccgtccctaattataagaccc 35868092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 37728713 - 37728741
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  37728713 tactccctccgtccctaattataagaccc 37728741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 43868103 - 43868131
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  43868103 tactccctccgtccctaattataagaccc 43868131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 44543782 - 44543810
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44543782 tactccctccgtccctaattataagaccc 44543810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 46050023 - 46049995
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  46050023 tactccctccgtccctaattataagaccc 46049995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 50647684 - 50647712
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  50647684 tactccctccgtccctaattataagaccc 50647712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 51284099 - 51284071
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  51284099 tactccctccgtccctaattataagaccc 51284071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 52058985 - 52059013
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  52058985 tactccctccgtccctaattataagaccc 52059013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 29279191 - 29279223
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  29279191 aaactactccctccgtccctaattataagaccc 29279223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 18455718 - 18455748
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  18455718 actactccctccgtccctaattataagaccc 18455748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 43653941 - 43653971
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  43653941 actactccctccgtccctaattataagaccc 43653971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 13154226 - 13154197
Alignment:
Q  242 ctactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||    
T  13154226 ctactccctccgtccctaattataagaccc 13154197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 38183604 - 38183575
Alignment:
Q  241 actactccctccgtccctaattataagacc 270  Q
    ||||||||||||||||||||||||||||||    
T  38183604 actactccctccgtccctaattataagacc 38183575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 42885053 - 42885082
Alignment:
Q  242 ctactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||    
T  42885053 ctactccctccgtccctaattataagaccc 42885082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 51132 - 51104
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  51132 tactccctccgtccctaattataagaccc 51104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 1774342 - 1774370
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  1774342 tactccctccgtccctaattataagaccc 1774370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 2944309 - 2944281
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  2944309 tactccctccgtccctaattataagaccc 2944281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 8251970 - 8251942
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  8251970 tactccctccgtccctaattataagaccc 8251942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 8951465 - 8951437
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  8951465 tactccctccgtccctaattataagaccc 8951437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 9035585 - 9035549
Alignment:
Q  234 caaagaaactactccctccgtccctaattataagacc 270  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  9035585 caaaaaaattactccctccgtccctaattataagacc 9035549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 11798902 - 11798874
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  11798902 tactccctccgtccctaattataagaccc 11798874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 13153928 - 13153956
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  13153928 tactccctccgtccctaattataagaccc 13153956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 17856813 - 17856785
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  17856813 tactccctccgtccctaattataagaccc 17856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 18754144 - 18754172
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  18754144 tactccctccgtccctaattataagaccc 18754172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 26016569 - 26016597
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  26016569 tactccctccgtccctaattataagaccc 26016597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 28192212 - 28192184
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  28192212 tactccctccgtccctaattataagaccc 28192184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 28572046 - 28572074
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  28572046 tactccctccgtccctaattataagaccc 28572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 28579639 - 28579667
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  28579639 tactccctccgtccctaattataagaccc 28579667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 29279493 - 29279465
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  29279493 tactccctccgtccctaattataagaccc 29279465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 32675794 - 32675766
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  32675794 tactccctccgtccctaattataagaccc 32675766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 34568490 - 34568518
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34568490 tactccctccgtccctaattataagaccc 34568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39029178 - 39029206
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39029178 tactccctccgtccctaattataagaccc 39029206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 40530443 - 40530415
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  40530443 tactccctccgtccctaattataagaccc 40530415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 44250859 - 44250887
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44250859 tactccctccgtccctaattataagaccc 44250887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 20391478 - 20391446
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  20391478 aaactactccctccgtccctaattataagaccc 20391446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 55631995 - 55632027
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  55631995 aaactactccctccgtccctaattataagaccc 55632027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 5743395 - 5743426
Alignment:
Q  239 aaactactccctccgtccctaattataagacc 270  Q
    ||||||||||||||||||||||||||||||||    
T  5743395 aaactactccctccgtccctaattataagacc 5743426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 26626042 - 26626011
Alignment:
Q  240 aactactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||||    
T  26626042 aactactccctccgtccctaattataagaccc 26626011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 32033031 - 32033002
Alignment:
Q  242 ctactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||    
T  32033031 ctactccctccgtccctaattataagaccc 32033002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 4035825 - 4035853
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4035825 tactccctccgtccctaattataagaccc 4035853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 4036122 - 4036094
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4036122 tactccctccgtccctaattataagaccc 4036094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 4549629 - 4549657
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4549629 tactccctccgtccctaattataagaccc 4549657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 5375594 - 5375566
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  5375594 tactccctccgtccctaattataagaccc 5375566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 5743696 - 5743668
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  5743696 tactccctccgtccctaattataagaccc 5743668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 9328277 - 9328249
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9328277 tactccctccgtccctaattataagaccc 9328249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 20747467 - 20747439
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  20747467 tactccctccgtccctaattataagaccc 20747439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 25708420 - 25708448
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  25708420 tactccctccgtccctaattataagaccc 25708448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 29014064 - 29014092
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  29014064 tactccctccgtccctaattataagaccc 29014092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 29520205 - 29520173
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||| ||||||||||||||||||||||||    
T  29520205 aaactactacctccgtccctaattataagaccc 29520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 30771528 - 30771556
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  30771528 tactccctccgtccctaattataagaccc 30771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 33413518 - 33413546
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  33413518 tactccctccgtccctaattataagaccc 33413546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34273256 - 34273228
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34273256 tactccctccgtccctaattataagaccc 34273228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 35675957 - 35675929
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  35675957 tactccctccgtccctaattataagaccc 35675929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 44294789 - 44294817
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44294789 tactccctccgtccctaattataagaccc 44294817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 45742843 - 45742815
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  45742843 tactccctccgtccctaattataagaccc 45742815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 47806860 - 47806888
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  47806860 tactccctccgtccctaattataagaccc 47806888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 50533881 - 50533909
Alignment:
Q  240 aactactccctccgtccctaattataaga 268  Q
    |||||||||||||||||||||||||||||    
T  50533881 aactactccctccgtccctaattataaga 50533909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 52977982 - 52978010
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  52977982 tactccctccgtccctaattataagaccc 52978010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 53277222 - 53277194
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  53277222 tactccctccgtccctaattataagaccc 53277194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 17408335 - 17408303
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  17408335 aaactactccctccgtccctaattataagaccc 17408303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 7492148 - 7492113
Alignment:
Q  236 aagaaactactccctccgtccctaattataagaccc 271  Q
    |||||| |||||||||||||||||||||||||||||    
T  7492148 aagaaagtactccctccgtccctaattataagaccc 7492113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 2438225 - 2438253
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  2438225 tactccctccgtccctaattataagaccc 2438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 2438522 - 2438494
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  2438522 tactccctccgtccctaattataagaccc 2438494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 7491844 - 7491872
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  7491844 tactccctccgtccctaattataagaccc 7491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 8716929 - 8716901
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  8716929 tactccctccgtccctaattataagaccc 8716901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 11201683 - 11201711
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  11201683 tactccctccgtccctaattataagaccc 11201711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 13215861 - 13215829
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||| ||||||||||||||||||||||||    
T  13215861 aaactactacctccgtccctaattataagaccc 13215829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 16108215 - 16108243
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  16108215 tactccctccgtccctaattataagaccc 16108243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 16456608 - 16456640
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||| ||||||||||||||||||||||||||    
T  16456608 aaactattccctccgtccctaattataagaccc 16456640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 20252210 - 20252238
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  20252210 tactccctccgtccctaattataagaccc 20252238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 22182961 - 22182933
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  22182961 tactccctccgtccctaattataagaccc 22182933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 22897688 - 22897660
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  22897688 tactccctccgtccctaattataagaccc 22897660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 27560206 - 27560234
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  27560206 tactccctccgtccctaattataagaccc 27560234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34062702 - 34062674
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34062702 tactccctccgtccctaattataagaccc 34062674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34113823 - 34113795
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34113823 tactccctccgtccctaattataagaccc 34113795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34883885 - 34883857
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34883885 tactccctccgtccctaattataagaccc 34883857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 36131065 - 36131037
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  36131065 tactccctccgtccctaattataagaccc 36131037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39833739 - 39833767
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39833739 tactccctccgtccctaattataagaccc 39833767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 40607702 - 40607730
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  40607702 tactccctccgtccctaattataagaccc 40607730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 41450516 - 41450544
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  41450516 tactccctccgtccctaattataagaccc 41450544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 45474351 - 45474379
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  45474351 tactccctccgtccctaattataagaccc 45474379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 23541975 - 23542007
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||||    
T  23541975 aaactactccctccgtccctaattataagaccc 23542007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 36694851 - 36694882
Alignment:
Q  240 aactactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||||    
T  36694851 aactactccctccgtccctaattataagaccc 36694882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 36710952 - 36710983
Alignment:
Q  240 aactactccctccgtccctaattataagaccc 271  Q
    ||||||||||||||||||||||||||||||||    
T  36710952 aactactccctccgtccctaattataagaccc 36710983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 46075906 - 46075876
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  46075906 actactccctccgtccctaattataagaccc 46075876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 943674 - 943646
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  943674 tactccctccgtccctaattataagaccc 943646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 1039418 - 1039390
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  1039418 tactccctccgtccctaattataagaccc 1039390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 1046324 - 1046296
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  1046324 tactccctccgtccctaattataagaccc 1046296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 1047992 - 1048020
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  1047992 tactccctccgtccctaattataagaccc 1048020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 4102751 - 4102723
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4102751 tactccctccgtccctaattataagaccc 4102723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 8104325 - 8104297
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  8104325 tactccctccgtccctaattataagaccc 8104297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 9202245 - 9202273
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9202245 tactccctccgtccctaattataagaccc 9202273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 11741397 - 11741425
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  11741397 tactccctccgtccctaattataagaccc 11741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 15811269 - 15811241
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  15811269 tactccctccgtccctaattataagaccc 15811241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 16456636 - 16456664
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  16456636 tactccctccgtccctaattataagaccc 16456664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 23542276 - 23542248
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  23542276 tactccctccgtccctaattataagaccc 23542248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 30290265 - 30290293
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  30290265 tactccctccgtccctaattataagaccc 30290293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 37951986 - 37951958
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  37951986 tactccctccgtccctaattataagaccc 37951958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 38920239 - 38920267
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  38920239 tactccctccgtccctaattataagaccc 38920267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39362934 - 39362962
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39362934 tactccctccgtccctaattataagaccc 39362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 39363231 - 39363203
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39363231 tactccctccgtccctaattataagaccc 39363203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39497433 - 39497461
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39497433 tactccctccgtccctaattataagaccc 39497461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 39497730 - 39497702
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39497730 tactccctccgtccctaattataagaccc 39497702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39750121 - 39750149
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39750121 tactccctccgtccctaattataagaccc 39750149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 44646568 - 44646540
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44646568 tactccctccgtccctaattataagaccc 44646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 44649629 - 44649657
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44649629 tactccctccgtccctaattataagaccc 44649657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 44649926 - 44649898
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  44649926 tactccctccgtccctaattataagaccc 44649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 45039412 - 45039440
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  45039412 tactccctccgtccctaattataagaccc 45039440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 49907021 - 49907049
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  49907021 tactccctccgtccctaattataagaccc 49907049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 52431211 - 52431183
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  52431211 tactccctccgtccctaattataagaccc 52431183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 52601991 - 52602019
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  52601991 tactccctccgtccctaattataagaccc 52602019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 3821 - 3791
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  3821 actactccctccgtccctaattataagaccc 3791  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 19920561 - 19920591
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  19920561 actactccctccgtccctaattataagaccc 19920591  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 20075144 - 20075116
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  20075144 tactccctccgtccctaattataagaccc 20075116  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 21295151 - 21295179
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  21295151 tactccctccgtccctaattataagaccc 21295179  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 25247729 - 25247701
Alignment:
Q  241 actactccctccgtccctaattataagac 269  Q
    |||||||||||||||||||||||||||||    
T  25247729 actactccctccgtccctaattataagac 25247701  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 26255096 - 26255124
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  26255096 tactccctccgtccctaattataagaccc 26255124  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 28061014 - 28060986
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  28061014 tactccctccgtccctaattataagaccc 28060986  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 29286074 - 29286046
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  29286074 tactccctccgtccctaattataagaccc 29286046  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 32814433 - 32814461
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  32814433 tactccctccgtccctaattataagaccc 32814461  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 32872412 - 32872384
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  32872412 tactccctccgtccctaattataagaccc 32872384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 33858903 - 33858875
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  33858903 tactccctccgtccctaattataagaccc 33858875  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 36698168 - 36698140
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  36698168 tactccctccgtccctaattataagaccc 36698140  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 38428444 - 38428416
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  38428444 tactccctccgtccctaattataagaccc 38428416  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 38858298 - 38858326
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  38858298 tactccctccgtccctaattataagaccc 38858326  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 39197718 - 39197746
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39197718 tactccctccgtccctaattataagaccc 39197746  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 39871650 - 39871622
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  39871650 tactccctccgtccctaattataagaccc 39871622  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 40300230 - 40300258
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  40300230 tactccctccgtccctaattataagaccc 40300258  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 41026133 - 41026105
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  41026133 tactccctccgtccctaattataagaccc 41026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 41252398 - 41252370
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  41252398 tactccctccgtccctaattataagaccc 41252370  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 48521029 - 48521057
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  48521029 tactccctccgtccctaattataagaccc 48521057  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 287454 - 287424
Alignment:
Q  240 aactactccctccgtccctaattataagacc 270  Q
    |||||||||||||||||||||||||||||||    
T  287454 aactactccctccgtccctaattataagacc 287424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 8743186 - 8743216
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  8743186 actactccctccgtccctaattataagaccc 8743216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 9388527 - 9388557
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  9388527 actactccctccgtccctaattataagaccc 9388557  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 23398178 - 23398148
Alignment:
Q  241 actactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||||    
T  23398178 actactccctccgtccctaattataagaccc 23398148  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 231142 - 231114
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  231142 tactccctccgtccctaattataagaccc 231114  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 4844400 - 4844428
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  4844400 tactccctccgtccctaattataagaccc 4844428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 9038642 - 9038670
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9038642 tactccctccgtccctaattataagaccc 9038670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 11847869 - 11847841
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  11847869 tactccctccgtccctaattataagaccc 11847841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 12144075 - 12144047
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  12144075 tactccctccgtccctaattataagaccc 12144047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 30248647 - 30248675
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  30248647 tactccctccgtccctaattataagaccc 30248675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 31091441 - 31091473
Alignment:
Q  239 aaactactccctccgtccctaattataagaccc 271  Q
    |||||||| ||||||||||||||||||||||||    
T  31091441 aaactactacctccgtccctaattataagaccc 31091473  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 33487832 - 33487860
Alignment:
Q  242 ctactccctccgtccctaattataagacc 270  Q
    |||||||||||||||||||||||||||||    
T  33487832 ctactccctccgtccctaattataagacc 33487860  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34301869 - 34301841
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34301869 tactccctccgtccctaattataagaccc 34301841  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 34741763 - 34741735
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34741763 tactccctccgtccctaattataagaccc 34741735  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 12065 - 12093
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  12065 tactccctccgtccctaattataagaccc 12093  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 51719 - 51691
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  51719 tactccctccgtccctaattataagaccc 51691  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 65378 - 65406
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  65378 tactccctccgtccctaattataagaccc 65406  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 47640 - 47668
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  47640 tactccctccgtccctaattataagaccc 47668  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 47940 - 47912
Alignment:
Q  240 aactactccctccgtccctaattataaga 268  Q
    |||||||||||||||||||||||||||||    
T  47940 aactactccctccgtccctaattataaga 47912  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 259159 - 259131
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  259159 tactccctccgtccctaattataagaccc 259131  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 355368 - 355340
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  355368 tactccctccgtccctaattataagaccc 355340  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 186395 - 186367
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  186395 tactccctccgtccctaattataagaccc 186367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 1265949 - 1265977
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  1265949 tactccctccgtccctaattataagaccc 1265977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 6673265 - 6673237
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  6673265 tactccctccgtccctaattataagaccc 6673237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 7951562 - 7951590
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  7951562 tactccctccgtccctaattataagaccc 7951590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 9020694 - 9020722
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9020694 tactccctccgtccctaattataagaccc 9020722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 9828393 - 9828421
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9828393 tactccctccgtccctaattataagaccc 9828421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 9828690 - 9828662
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  9828690 tactccctccgtccctaattataagaccc 9828662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 10734560 - 10734532
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  10734560 tactccctccgtccctaattataagaccc 10734532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 14913648 - 14913676
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  14913648 tactccctccgtccctaattataagaccc 14913676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 16127259 - 16127287
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  16127259 tactccctccgtccctaattataagaccc 16127287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 16440931 - 16440959
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  16440931 tactccctccgtccctaattataagaccc 16440959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 22527692 - 22527720
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  22527692 tactccctccgtccctaattataagaccc 22527720  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 26894910 - 26894882
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  26894910 tactccctccgtccctaattataagaccc 26894882  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 34662204 - 34662232
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  34662204 tactccctccgtccctaattataagaccc 34662232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 40004446 - 40004418
Alignment:
Q  243 tactccctccgtccctaattataagaccc 271  Q
    |||||||||||||||||||||||||||||    
T  40004446 tactccctccgtccctaattataagaccc 40004418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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