View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_87 (Length: 329)
Name: NF1358_high_87
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_87 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 40215950 - 40215661
Alignment:
| Q |
30 |
aaatcgtgactactaacctaacatactaacataacaactaatatttgcatataaaaatctgatcaattaagtggaagtggaaatgttacttgagaatcca |
129 |
Q |
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| T |
40215950 |
aaatcgtgactactaacctaacatactaacataacaactaatatttgcatataaaaatctgatcaattaagtggaagtggaaatgttacttgagaatcca |
40215851 |
T |
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| Q |
130 |
agccacgacaaaggtaatagcaggaaggacattgaacatggcaactgcaaaagtagctgttgtatacttcattcccaaaaaatataaattttgatcaata |
229 |
Q |
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| T |
40215850 |
agccacgacaaaggtaatagcaggaaggacattgaacatggcaactgcaaaagtagctgttgtatacttcattcccaaaaaatataaattttgatcaata |
40215751 |
T |
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| Q |
230 |
acaggcctgcaataagaaattaaatactatcaaaatcaaggtaagtttttccatggaattgaagaatatgtttaaccatgcagagaatta |
319 |
Q |
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| T |
40215750 |
acaggcctgcaataagaaattaaatactatcaaaatcaaggtaagtttttccatggaattgaagaatatgtttaaccatgcagagaatta |
40215661 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 29318239 - 29318324
Alignment:
| Q |
143 |
gtaatagcaggaaggacattgaacatggcaactgcaaaagtagctgttgtatacttcattcccaaaaaatataaattttgatcaat |
228 |
Q |
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|||||||||||||| | |||| ||||||| ||||||| || || ||||| |||||||| ||||||||||||||||| || ||||| |
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| T |
29318239 |
gtaatagcaggaagcatattgctcatggcagctgcaaaggttgccgttgtgtacttcatccccaaaaaatataaattctggtcaat |
29318324 |
T |
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