View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_9 (Length: 643)
Name: NF1358_high_9
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 434 - 614
Target Start/End: Original strand, 25285986 - 25286166
Alignment:
| Q |
434 |
acttgtaatttattgcaagatacatataacttgcacttaaatttgttatgcaaataaaccaatgcatggaccctttcaaagatataaaagacttaccttt |
533 |
Q |
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| T |
25285986 |
acttataatttattgcaagatacatataacttgcactaaactttgttatgcaaataaaccaatgcatggaccctttaaaagatagaaaagactcaccttt |
25286085 |
T |
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| Q |
534 |
ctctcaaacaaccatgttatgctgacatacctcatatgtgatgagaatttccacatgaaatcacaatcagaacaaataaca |
614 |
Q |
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| T |
25286086 |
ctctcaaacaaccaagttatactgacatgccttatatgtgataagaatttccacttgaaatcacagttagaacaaataaca |
25286166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 43912301 - 43912204
Alignment:
| Q |
21 |
gttcatccaaggaaattatgaaccgaggggaaaatattgcaaaacatatgacatataccaacattgctgtctcaagttacaaactcaatcccaacccc |
118 |
Q |
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| T |
43912301 |
gttcatccaaggaaattatgaaccggagggaaaatattgcaaaacatatgacatataccaacattgctgtctcaagttacaaactcaatcccaacccc |
43912204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 175 - 302
Target Start/End: Complemental strand, 43912147 - 43912022
Alignment:
| Q |
175 |
actttacctttgtgtgtgagaagcttcttctactcttgctttaggaggacaggaatcaaaccaaccaaaggtcacatacataaattgtggcctagattat |
274 |
Q |
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| T |
43912147 |
actttacctttgtgtgtgagaagcttcttctactcttgctttaggaggccaggaatcaaaccaatc-aaggtcacgtacaaaaattgtag-ctggattat |
43912050 |
T |
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| Q |
275 |
tcaataatccacgattaagctgaacatt |
302 |
Q |
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| T |
43912049 |
tcaataatccacgattaagctgaacatt |
43912022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 3385461 - 3385509
Alignment:
| Q |
314 |
acagtttattaatattcgatcaaagacttactctcatacttgtaggctc |
362 |
Q |
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| T |
3385461 |
acagtttattaatattcgatcaaagacttactctcatacttgtaggctc |
3385509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 3387858 - 3387905
Alignment:
| Q |
357 |
aggctccatattgtcatattaaaacatcatcatctaaatctaagattc |
404 |
Q |
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| T |
3387858 |
aggctccatattgtcatattaaaacatcatcatctaaatctaagattc |
3387905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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