View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_high_90 (Length: 318)
Name: NF1358_high_90
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_90 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 28809425 - 28809729
Alignment:
| Q |
7 |
tatactcctcatgtcgctaagctgccaacaagagctgatgttgtagcnnnnnnncagtgtacgtatgctatcttcaggctcgttacagaaaggataatgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28809425 |
tatactcctcatgtcgctaagctgccaacaagagctgatgttgtaacaaaaaaacagtgtacgtatgctatcttcaggctcgttacagaaaggataatgc |
28809524 |
T |
|
| Q |
107 |
accggacaagtgactcctcgagtttgaaaacgtacccgtgttggaaggcagcctcaagtaactctccatnnnnnnnnnn-gattcttggaggcattttta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28809525 |
accggacaagtgactcctcgagtttgaaaacgtacccgtgttggaaggcagcctcaagtaactctccataaaaaaaaaaagattcttggaggcattttta |
28809624 |
T |
|
| Q |
206 |
tacgccaaatctgattccagttaccattaattcgattctgttgtgcatttaagtttctttccataatgtttctatatgcaccgcgaactgaatagatcct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28809625 |
tacgccaaatctgattccagttaccattaattcgattctgttgtgcatttaagtttctttccataatgtttctatatgcaccgcgaactgaatagatccc |
28809724 |
T |
|
| Q |
306 |
atgct |
310 |
Q |
| |
|
||||| |
|
|
| T |
28809725 |
atgct |
28809729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 73 - 310
Target Start/End: Original strand, 249310 - 249548
Alignment:
| Q |
73 |
gctatcttcaggctcgttacagaaaggataatgcaccggacaagtgactcctcgagtttgaaaacgtacccgtgttggaaggcagcctcaagtaactctc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||| ||||| |
|
|
| T |
249310 |
gctatcttcaggctcgttacagaaaggacaatgcactggacaagtgactcctcgagtttgcaaacgcacccgtattggaaggcagcctcgagtagctctc |
249409 |
T |
|
| Q |
173 |
catnnnnnnnnnn-gattcttggaggcatttttatacgccaaatctgattccagttaccattaattcgattctgttgtgcatttaagtttctttccataa |
271 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
249410 |
cataaaaaaaatttgattcttggaggcatttttatacgccaaatctgattccagtcaccattaattcggttctgttgtgcatttaagtttctttccataa |
249509 |
T |
|
| Q |
272 |
tgtttctatatgcaccgcgaactgaatagatcctatgct |
310 |
Q |
| |
|
| || |||||||||| ||||| |||||||||| ||||| |
|
|
| T |
249510 |
tattcctatatgcactacgaaccgaatagatcccatgct |
249548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University