View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_high_94 (Length: 309)
Name: NF1358_high_94
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_high_94 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 39000298 - 38999993
Alignment:
| Q |
1 |
ttaagttagtttgatgaataaaattactaataaaagatatattcagtaacattttagttattttgatatattcaaagactatattgatatagtatcacac |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000298 |
ttaagttagtttgatgaataaaattactaacaaaagatatattcagtaatattttagttattttgatatattcaaagactatattgatatagtatcacac |
39000199 |
T |
|
| Q |
101 |
--------accaaaattgtgatttactcaatgaaagagtagcaaccaaaagaaaagtggcacccaaacaaacatgtacatcatcatgctctttctctatt |
192 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000198 |
gttttgtaaccaaaattatgatttactcaatgaaagagtagcaaccaaaagaaaagtggcacccaaacaaacatgtacatcatcatgctctttctctatt |
39000099 |
T |
|
| Q |
193 |
cattttcatgctccattctttattttttacctactgcctcaagctcctttgttctccataaagcaagccacttatttcaactccaagtttctccttatac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39000098 |
cattttcatgctccattctttattttttacctactgcctcaagctcctttgttctccataaagcaagccacttatttcaactccaagtttctccttatac |
38999999 |
T |
|
| Q |
293 |
ctctct |
298 |
Q |
| |
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|||||| |
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|
| T |
38999998 |
ctctct |
38999993 |
T |
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