View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_1 (Length: 843)

Name: NF1358_low_1
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_1
NF1358_low_1
[»] chr4 (51 HSPs)
chr4 (327-807)||(21937724-21938226)
chr4 (116-332)||(21937474-21937689)
chr4 (30-93)||(44221445-44221508)
chr4 (29-93)||(43034342-43034406)
chr4 (35-103)||(37930835-37930905)
chr4 (26-79)||(50380850-50380903)
chr4 (35-103)||(19908695-19908765)
chr4 (30-93)||(40070968-40071031)
chr4 (47-93)||(3936642-3936688)
chr4 (37-83)||(12192501-12192547)
chr4 (47-93)||(14542760-14542806)
chr4 (54-92)||(20403169-20403207)
chr4 (31-93)||(49308819-49308881)
chr4 (37-90)||(15170102-15170155)
chr4 (56-93)||(19124622-19124659)
chr4 (56-93)||(22630360-22630397)
chr4 (35-92)||(29681458-29681515)
chr4 (56-93)||(47806256-47806293)
chr4 (56-93)||(52132302-52132339)
chr4 (35-79)||(27537751-27537795)
chr4 (45-93)||(32737735-32737783)
chr4 (26-78)||(32923245-32923297)
chr4 (29-93)||(38453262-38453326)
chr4 (56-91)||(6520095-6520130)
chr4 (58-93)||(17216129-17216164)
chr4 (43-90)||(56497611-56497658)
chr4 (58-92)||(1701635-1701669)
chr4 (55-93)||(3299094-3299132)
chr4 (58-92)||(9990292-9990326)
chr4 (56-90)||(10006364-10006398)
chr4 (56-90)||(12698621-12698655)
chr4 (29-79)||(13276126-13276176)
chr4 (37-91)||(16067923-16067977)
chr4 (56-86)||(21623426-21623456)
chr4 (56-90)||(25978341-25978375)
chr4 (55-93)||(27655754-27655791)
chr4 (37-87)||(42344624-42344674)
chr4 (29-82)||(2186344-2186397)
chr4 (56-93)||(8020648-8020684)
chr4 (56-93)||(11144665-11144702)
chr4 (56-93)||(11166710-11166747)
chr4 (56-93)||(13121568-13121605)
chr4 (52-93)||(19479477-19479518)
chr4 (29-103)||(24664979-24665055)
chr4 (56-93)||(24785462-24785499)
chr4 (56-93)||(24822767-24822804)
chr4 (56-93)||(29568610-29568647)
chr4 (56-93)||(37800855-37800892)
chr4 (56-93)||(49473669-49473706)
chr4 (29-90)||(51002284-51002345)
chr4 (56-93)||(56551592-56551629)
[»] chr3 (47 HSPs)
chr3 (30-91)||(42074101-42074162)
chr3 (35-87)||(28430571-28430623)
chr3 (26-81)||(3176985-3177040)
chr3 (29-90)||(8139712-8139773)
chr3 (29-90)||(52575944-52576005)
chr3 (30-90)||(7938722-7938782)
chr3 (29-93)||(28244104-28244168)
chr3 (33-86)||(2153508-2153561)
chr3 (56-93)||(8075809-8075846)
chr3 (56-93)||(13829077-13829114)
chr3 (56-93)||(25505701-25505738)
chr3 (26-104)||(29164740-29164820)
chr3 (56-93)||(30200850-30200887)
chr3 (56-93)||(35191817-35191854)
chr3 (38-87)||(43630424-43630473)
chr3 (56-93)||(45096050-45096087)
chr3 (56-93)||(46253897-46253934)
chr3 (27-92)||(51061051-51061116)
chr3 (56-92)||(5702179-5702215)
chr3 (58-90)||(14771357-14771389)
chr3 (57-93)||(53207995-53208031)
chr3 (30-81)||(8942015-8942066)
chr3 (35-90)||(19468454-19468509)
chr3 (54-93)||(24273645-24273684)
chr3 (38-93)||(27397612-27397667)
chr3 (54-93)||(41990584-41990623)
chr3 (54-93)||(53681877-53681916)
chr3 (47-90)||(53996314-53996357)
chr3 (56-90)||(4760131-4760165)
chr3 (47-93)||(14160278-14160324)
chr3 (29-91)||(19939043-19939105)
chr3 (35-93)||(21914071-21914129)
chr3 (52-103)||(22722422-22722475)
chr3 (47-93)||(25441500-25441546)
chr3 (35-93)||(38130959-38131017)
chr3 (29-79)||(43490431-43490481)
chr3 (19-93)||(48849763-48849836)
chr3 (56-93)||(1149069-1149106)
chr3 (29-90)||(1757672-1757733)
chr3 (26-79)||(10843795-10843848)
chr3 (56-93)||(20400101-20400138)
chr3 (54-87)||(24348409-24348442)
chr3 (29-86)||(28130941-28130998)
chr3 (26-75)||(34326001-34326050)
chr3 (47-92)||(38559897-38559942)
chr3 (60-93)||(45885477-45885510)
chr3 (56-93)||(54230099-54230136)
[»] scaffold0008 (2 HSPs)
scaffold0008 (30-87)||(122889-122946)
scaffold0008 (56-90)||(119201-119235)
[»] chr1 (53 HSPs)
chr1 (26-87)||(28832177-28832238)
chr1 (56-93)||(29251778-29251815)
chr1 (35-90)||(16580802-16580857)
chr1 (54-93)||(17221520-17221559)
chr1 (54-93)||(30561745-30561784)
chr1 (43-93)||(12522119-12522169)
chr1 (31-93)||(18056716-18056778)
chr1 (47-93)||(22335373-22335419)
chr1 (35-93)||(28039860-28039918)
chr1 (28-90)||(31426757-31426819)
chr1 (30-92)||(35442853-35442915)
chr1 (35-93)||(37050932-37050990)
chr1 (43-92)||(12783702-12783751)
chr1 (29-86)||(30483122-30483179)
chr1 (56-93)||(33020043-33020080)
chr1 (56-92)||(10132445-10132481)
chr1 (56-92)||(13054897-13054933)
chr1 (26-90)||(15382822-15382886)
chr1 (29-93)||(25532970-25533034)
chr1 (38-103)||(29987100-29987167)
chr1 (35-87)||(36467031-36467083)
chr1 (37-93)||(37705130-37705186)
chr1 (34-90)||(39949814-39949870)
chr1 (56-92)||(41362643-41362679)
chr1 (35-91)||(45481496-45481552)
chr1 (56-103)||(2665290-2665340)
chr1 (56-87)||(14880852-14880883)
chr1 (29-80)||(17339212-17339263)
chr1 (30-93)||(32497481-32497544)
chr1 (54-89)||(41019701-41019736)
chr1 (60-103)||(5280659-5280704)
chr1 (25-91)||(10356185-10356251)
chr1 (35-93)||(12268984-12269042)
chr1 (56-103)||(29233962-29234011)
chr1 (54-92)||(30795723-30795761)
chr1 (47-93)||(32944751-32944797)
chr1 (30-92)||(34766858-34766920)
chr1 (63-93)||(41950084-41950114)
chr1 (35-93)||(41973258-41973316)
chr1 (51-93)||(52853030-52853072)
chr1 (35-103)||(4770617-4770686)
chr1 (56-93)||(6000143-6000180)
chr1 (56-93)||(11681247-11681284)
chr1 (56-93)||(21400023-21400060)
chr1 (29-93)||(24752647-24752712)
chr1 (24-93)||(27853347-27853416)
chr1 (54-91)||(29798118-29798155)
chr1 (29-78)||(31338016-31338065)
chr1 (60-93)||(35778201-35778234)
chr1 (32-93)||(44258775-44258836)
chr1 (60-93)||(46335059-46335092)
chr1 (56-93)||(47528447-47528484)
chr1 (29-78)||(48681948-48681997)
[»] chr6 (36 HSPs)
chr6 (29-93)||(9111044-9111108)
chr6 (26-90)||(10778834-10778898)
chr6 (27-93)||(10278448-10278514)
chr6 (48-93)||(12808885-12808930)
chr6 (29-93)||(2726417-2726481)
chr6 (29-93)||(31971526-31971590)
chr6 (35-103)||(9977060-9977130)
chr6 (29-92)||(28592688-28592751)
chr6 (35-93)||(12700421-12700479)
chr6 (37-87)||(34701152-34701202)
chr6 (26-91)||(1918460-1918525)
chr6 (29-78)||(28951396-28951445)
chr6 (30-78)||(8629711-8629759)
chr6 (55-87)||(17113466-17113498)
chr6 (29-93)||(20744135-20744199)
chr6 (58-90)||(30639429-30639461)
chr6 (38-93)||(8569715-8569770)
chr6 (56-87)||(14049890-14049921)
chr6 (27-78)||(33938694-33938745)
chr6 (37-79)||(2213302-2213344)
chr6 (35-93)||(8637437-8637495)
chr6 (29-79)||(13496113-13496163)
chr6 (56-103)||(15187087-15187136)
chr6 (56-103)||(15473470-15473519)
chr6 (29-87)||(16125032-16125090)
chr6 (32-82)||(32149138-32149188)
chr6 (56-93)||(404187-404224)
chr6 (56-93)||(655749-655786)
chr6 (56-93)||(2613516-2613553)
chr6 (56-93)||(12412301-12412338)
chr6 (30-79)||(13044628-13044677)
chr6 (50-79)||(18253353-18253382)
chr6 (56-93)||(28046178-28046215)
chr6 (29-82)||(29335586-29335639)
chr6 (24-93)||(34481414-34481483)
chr6 (32-93)||(34750537-34750598)
[»] chr5 (45 HSPs)
chr5 (29-93)||(5107245-5107309)
chr5 (47-92)||(31708147-31708192)
chr5 (29-93)||(6624773-6624837)
chr5 (29-93)||(16089447-16089511)
chr5 (26-90)||(32675296-32675360)
chr5 (27-103)||(13864339-13864417)
chr5 (54-92)||(17144501-17144539)
chr5 (29-79)||(18589881-18589931)
chr5 (56-93)||(3222755-3222792)
chr5 (43-92)||(12611036-12611085)
chr5 (37-103)||(16579362-16579430)
chr5 (35-87)||(1538814-1538866)
chr5 (58-90)||(11017202-11017234)
chr5 (26-78)||(26034623-26034675)
chr5 (26-78)||(27903107-27903159)
chr5 (56-103)||(37614329-37614377)
chr5 (56-103)||(37791066-37791114)
chr5 (29-93)||(37932327-37932391)
chr5 (26-81)||(13796324-13796379)
chr5 (23-86)||(19759920-19759983)
chr5 (56-91)||(25607060-25607095)
chr5 (26-93)||(31877922-31877989)
chr5 (29-103)||(33645679-33645753)
chr5 (39-86)||(36162896-36162943)
chr5 (56-87)||(40446007-40446038)
chr5 (29-79)||(21594400-21594450)
chr5 (29-79)||(21598517-21598567)
chr5 (35-93)||(22498945-22499002)
chr5 (26-103)||(29178441-29178518)
chr5 (35-93)||(39914904-39914961)
chr5 (26-72)||(40027785-40027831)
chr5 (30-92)||(40175651-40175713)
chr5 (54-91)||(2705518-2705555)
chr5 (58-87)||(5974231-5974260)
chr5 (56-93)||(6489031-6489068)
chr5 (29-90)||(8350667-8350728)
chr5 (27-76)||(17046329-17046378)
chr5 (59-92)||(17465396-17465429)
chr5 (32-93)||(20721050-20721111)
chr5 (29-90)||(28207129-28207190)
chr5 (60-93)||(35807741-35807774)
chr5 (30-79)||(41650953-41651002)
chr5 (56-93)||(42168945-42168982)
chr5 (29-78)||(42505869-42505918)
chr5 (30-79)||(42515805-42515854)
[»] chr2 (42 HSPs)
chr2 (29-93)||(2256968-2257032)
chr2 (29-93)||(42475110-42475174)
chr2 (35-92)||(19549439-19549496)
chr2 (56-93)||(24393269-24393306)
chr2 (30-103)||(12599853-12599928)
chr2 (29-76)||(32204541-32204588)
chr2 (54-93)||(43356542-43356581)
chr2 (35-93)||(34903520-34903578)
chr2 (56-93)||(12413517-12413554)
chr2 (56-93)||(12425577-12425614)
chr2 (29-90)||(20455888-20455949)
chr2 (56-93)||(43117190-43117227)
chr2 (43-79)||(4531422-4531458)
chr2 (54-90)||(6579284-6579320)
chr2 (58-94)||(27152379-27152415)
chr2 (35-91)||(35727440-35727496)
chr2 (58-93)||(3503000-3503035)
chr2 (58-93)||(10723965-10724000)
chr2 (54-93)||(22520239-22520278)
chr2 (54-93)||(25274829-25274868)
chr2 (37-92)||(29872173-29872228)
chr2 (27-103)||(31815875-31815953)
chr2 (56-91)||(40096855-40096890)
chr2 (33-92)||(41668656-41668715)
chr2 (35-93)||(7640661-7640719)
chr2 (29-79)||(11428864-11428914)
chr2 (55-89)||(18782544-18782578)
chr2 (32-78)||(19159941-19159987)
chr2 (29-79)||(34977201-34977251)
chr2 (53-87)||(36193950-36193984)
chr2 (35-93)||(38443518-38443576)
chr2 (56-90)||(41778947-41778981)
chr2 (53-101)||(7201528-7201577)
chr2 (37-78)||(13196705-13196746)
chr2 (56-93)||(22608551-22608588)
chr2 (56-93)||(23407018-23407055)
chr2 (56-93)||(24592846-24592883)
chr2 (56-93)||(24593400-24593437)
chr2 (29-103)||(29133472-29133548)
chr2 (37-78)||(33966326-33966367)
chr2 (56-89)||(39384166-39384199)
chr2 (51-92)||(41526777-41526818)
[»] scaffold0334 (1 HSPs)
scaffold0334 (43-103)||(5193-5255)
[»] chr7 (31 HSPs)
chr7 (32-79)||(45088876-45088923)
chr7 (54-90)||(6768710-6768746)
chr7 (35-91)||(31292771-31292827)
chr7 (30-93)||(44410596-44410659)
chr7 (56-94)||(7872747-7872785)
chr7 (47-93)||(9522927-9522973)
chr7 (29-103)||(1399159-1399235)
chr7 (56-93)||(6384875-6384912)
chr7 (26-87)||(6565519-6565580)
chr7 (30-79)||(34934294-34934343)
chr7 (35-94)||(34722019-34722079)
chr7 (27-78)||(21580811-21580862)
chr7 (58-93)||(25923417-25923452)
chr7 (29-80)||(27993042-27993093)
chr7 (35-86)||(32496889-32496940)
chr7 (47-86)||(44558781-44558820)
chr7 (30-93)||(48837865-48837928)
chr7 (29-87)||(5041336-5041394)
chr7 (37-79)||(12167412-12167454)
chr7 (43-93)||(21286361-21286411)
chr7 (35-93)||(37235314-37235372)
chr7 (29-79)||(48065199-48065249)
chr7 (56-93)||(2916126-2916163)
chr7 (52-81)||(3671844-3671873)
chr7 (32-93)||(15018005-15018065)
chr7 (28-93)||(20131840-20131905)
chr7 (58-91)||(26009302-26009335)
chr7 (29-78)||(29726797-29726846)
chr7 (56-93)||(35142149-35142186)
chr7 (56-89)||(37864449-37864482)
chr7 (56-93)||(46987110-46987147)
[»] scaffold0122 (1 HSPs)
scaffold0122 (24-103)||(14174-14255)
[»] chr8 (29 HSPs)
chr8 (36-93)||(41603065-41603122)
chr8 (29-93)||(10732775-10732839)
chr8 (31-93)||(31336807-31336869)
chr8 (29-87)||(37117530-37117588)
chr8 (56-93)||(30623317-30623354)
chr8 (35-92)||(34420863-34420920)
chr8 (56-93)||(38763515-38763552)
chr8 (35-87)||(8442493-8442545)
chr8 (35-78)||(56819-56862)
chr8 (29-92)||(13357442-13357505)
chr8 (47-103)||(32944828-32944886)
chr8 (28-86)||(2181124-2181182)
chr8 (54-92)||(8078101-8078139)
chr8 (47-89)||(12910810-12910852)
chr8 (62-92)||(13032363-13032393)
chr8 (56-94)||(39821908-39821946)
chr8 (54-92)||(44019571-44019609)
chr8 (56-90)||(45396588-45396622)
chr8 (56-93)||(1244705-1244742)
chr8 (35-92)||(3102311-3102368)
chr8 (43-92)||(8148428-8148477)
chr8 (56-93)||(9655997-9656034)
chr8 (35-76)||(10601766-10601807)
chr8 (29-103)||(18533666-18533742)
chr8 (29-90)||(21557430-21557491)
chr8 (29-103)||(29376898-29376974)
chr8 (56-93)||(32944949-32944986)
chr8 (56-93)||(34073755-34073792)
chr8 (37-78)||(37141362-37141403)
[»] scaffold0262 (1 HSPs)
scaffold0262 (29-93)||(15930-15994)
[»] scaffold0062 (1 HSPs)
scaffold0062 (26-90)||(7468-7531)
[»] scaffold0160 (1 HSPs)
scaffold0160 (52-93)||(22931-22972)
[»] scaffold0050 (1 HSPs)
scaffold0050 (29-103)||(53368-53444)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 327 - 807
Target Start/End: Original strand, 21937724 - 21938226
Alignment:
Q  327 ttaaatttaattgagttatacatcttaataatatttaagaggtatctaatgaattttaaggagagagtatcaatataacccctttgatttgggattccaa 426  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21937724 ttaaatttaattgagttatacatcttaaaaatatttaagaggtatctaatgaattttaaggagagagtatcaatataacccctttgatttgggattccaa 21937823  T
Q  427 cttgagagaatctaaattcaattttttactacaaatataaattgaacatattaacatattattcaaaatg-------------gagataagagaagagtg 513  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||             || ||||||||||||||    
T  21937824 cttgagagaatccaaatacaattttttactacaaatataaattgaacatattaacatattattcaaaatggattttagctattgacataagagaagagtg 21937923  T
Q  514 gaatgtagtcattgaaataaaatgaagtagaagagtttttaataggatatagagaagtttaaaagtgagatttaattttaaaatacccaaaaatatga-- 611  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  21937924 gaatatagtcattgaaataaaatgaagtagaagagtttttaataggatatagagaagtttaaaagtgagatttaattttaaaatacccaaaaatatgatt 21938023  T
Q  612 ------nnnnnnnnnggagagaatccattcccactagtactaatattctaagctttatctccatttgtcatct-nnnnnnnnnnnctccatttgtcaggt 704  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  21938024 ttttttatttttttttgagagaatccattcccactagtactaatattctaagctttatctccatttgtcatctataaaaaaaaaactccatttgtcaggt 21938123  T
Q  705 tttgtaacttgtcagagagtgctttgacccattctgatttaatttaagcacaaaataacaaagtggtcagaaactagtatccaattgtccaggtaaagtg 804  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  21938124 tttgtaacttgtcagagagtgctttgacccattctgatttaatttaagcacaaaataacaaagtgggcagaaactagtatccaattgtccaagtaaagtg 21938223  T
Q  805 gtg 807  Q
    |||    
T  21938224 gtg 21938226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 116 - 332
Target Start/End: Original strand, 21937474 - 21937689
Alignment:
Q  116 attgtttgtgctatgaccttgcttattgaagacaaatgtggtacgtttgattgatagtgacaccacactcttagcatatcaaaccagattcaatagcaat 215  Q
    |||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21937474 attgtttgagctatggtcttgcttattgaagacaaatgtggtgcgtttgattgatagtgacaccacactcttagcatatcaaaccagattcaatagcaat 21937573  T
Q  216 tactaaaatagtaatttaaactctagaattttatgttacaatttaaaatttagtaagcaatggggaaaaggagannnnnnnngttcttcttaaatttgaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  21937574 tactaaaatagtaatttaaactctagaattttatgttacaatttaaaatttagtaagcaatggggaaaaggaga-tttttttgttcttcttaaatttgaa 21937672  T
Q  316 tcctatcgtgtttaaat 332  Q
    |||||||||||||||||    
T  21937673 tcctatcgtgtttaaat 21937689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 44221445 - 44221508
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  44221445 tcgtgagcttaattcagttggtatggacaatgcataatatatgcaaggtctgaggttcgaaccc 44221508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 43034406 - 43034342
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||| |||||    
T  43034406 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctgaggttcaaaccc 43034342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 37930905 - 37930835
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||| |||||||| | | |||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  37930905 agcttaactcaattggtaggtacaatgcataatatatgcaaggtctgaggttcaaaccccgaccaccacaa 37930835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 50380903 - 50380850
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||    
T  50380903 gttctcgtgagcttaattcagttggtatgaacaatgcataatatatgtaaggtc 50380850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 19908695 - 19908765
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||| ||| |||| | | |||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  19908695 agcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcgaaccccgaccaccacaa 19908765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 40071031 - 40070968
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||||||| || |||| |||||    
T  40071031 tcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtccgaagttcaaaccc 40070968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 3936642 - 3936688
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||    
T  3936642 ttggtatgaacaatgcataatatatgcaaggtccggggttcgaaccc 3936688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 12192547 - 12192501
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgag 83  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  12192547 cttagttcaattggtatgaacaatgcataatatatgcaaggtttgag 12192501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 14542806 - 14542760
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| | |||||||||||||||||||||||||| |||||||||||    
T  14542806 ttggcaaggacaatgcataatatatgcaaggtctggggttcgaaccc 14542760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 20403207 - 20403169
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  20403207 gaacaatgcataatatatgcaaggtctgaagttcgaacc 20403169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 49308819 - 49308881
Alignment:
Q  31 cgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||  ||| ||| || | |||||||||||||||||||||||||| |||||||||||    
T  49308819 cgtaagcttagctcagttgacaaggacaatgcataatatatgcaaggtctggggttcgaaccc 49308881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 15170155 - 15170102
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||    
T  15170155 cttaactcagttggtatgaacaatgcataatatatgcaaagtcttaggttcgaa 15170102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 19124659 - 19124622
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  19124659 acaatacataatatatgcaaggtctgaggttcgaaccc 19124622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 22630397 - 22630360
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  22630397 acaatgcataatatatgcaaggtctgaggttcaaaccc 22630360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 29681515 - 29681458
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||| |||| |||| ||| ||||||||||| |||||||| ||||||||||||||||    
T  29681515 agcttagttcagttggtatggacaatgcataaaatatgcaatgtctgaggttcgaacc 29681458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 47806293 - 47806256
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  47806293 acaatgcataatatatgcaaggtctggggttcgaaccc 47806256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 52132339 - 52132302
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  52132339 acaatgcataatatatgcaaggtctgtggttcgaaccc 52132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 27537751 - 27537795
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||    
T  27537751 agcttaactcaattggtatggacaatgcataatatatgcaaggtc 27537795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 32737783 - 32737735
Alignment:
Q  45 aattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| ||| |||||| ||||||||||||||||||| |||||||||||    
T  32737783 aattggtatggacaatgtataatatatgcaaggtctggggttcgaaccc 32737735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 32923297 - 32923245
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||||| |||||    
T  32923297 gttctcgtgagcttaactcagttggtatgaacaatgcataatatatgtaaggt 32923245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 38453262 - 38453326
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||  ||| |||||||| ||||||||||||||||||||||||   |||||||||||    
T  38453262 ctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccagggttcgaaccc 38453326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 6520095 - 6520130
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6520095 acaatgcataatatatgcaaggtttgaggttcgaac 6520130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 17216164 - 17216129
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||| ||||||||||    
T  17216164 aatgcataatatatgcaaggtctgaagttcgaaccc 17216129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 56497658 - 56497611
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||| | | |||||||||||||||||||||||||| ||||||||    
T  56497658 tcaattggtaaggacaatgcataatatatgcaaggtctggggttcgaa 56497611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 1701635 - 1701669
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||| ||||||||||||    
T  1701635 aatgcataatatatgcaaggtccgaggttcgaacc 1701669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 3299132 - 3299094
Alignment:
Q  55 aacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  3299132 aacaatgcataatatatgcaaggtttgaggttcaaaccc 3299094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 9990292 - 9990326
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||| |||||||||||||||    
T  9990292 aatgcataatatatgcaagatctgaggttcgaacc 9990326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 10006364 - 10006398
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||| ||||||||    
T  10006364 acaatgcataatatatgcaaggtctggggttcgaa 10006398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 12698621 - 12698655
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||| ||||||||    
T  12698621 acaatgcataatatatgcaaggtctggggttcgaa 12698655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 13276126 - 13276176
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| |||||||| | | ||||||||||||||||||||||||    
T  13276126 ctcgtgagcttaactcaattggtagggacaatgcataatatatgcaaggtc 13276176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 16067977 - 16067923
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||||||| ||||  ||||||||| ||||| |||||||||||| |||||||||||    
T  16067977 cttaattctattgatatgaacaatacataaaatatgcaaggtccgaggttcgaac 16067923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 21623456 - 21623426
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggtt 86  Q
    |||||||||||||||||||||||||||||||    
T  21623456 acaatgcataatatatgcaaggtctgaggtt 21623426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 25978341 - 25978375
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||| ||||||||||    
T  25978341 acaatgcataatatatgcaaggtccgaggttcgaa 25978375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 27655754 - 27655791
Alignment:
Q  55 aacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27655754 aacaatgcataatatatgcaaggtctg-ggttcgaaccc 27655791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 42344674 - 42344624
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| |||||||| | |||||||| ||||||||||||||||| |||||||    
T  42344674 cttaactcaattggtaggaacaatgtataatatatgcaaggtccgaggttc 42344624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 2186397 - 2186344
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctga 82  Q
    ||||| ||||||  ||| |||| ||| |||||||||||||||||||||||||||    
T  2186397 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctga 2186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 8020684 - 8020648
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| |||||||||||||    
T  8020684 acaatgcataatatatgcaaggtc-gaggttcgaaccc 8020648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 11144702 - 11144665
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  11144702 acaatgcataatatatgcaaggtctggggtttgaaccc 11144665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 11166710 - 11166747
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  11166710 acaatgtataatatatgcaaggtctaaggttcgaaccc 11166747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 13121568 - 13121605
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  13121568 acaatgcataatatatgcaaggtctgaagttcaaaccc 13121605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 19479518 - 19479477
Alignment:
Q  52 atgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  19479518 atgaacaatgcataatatatgcaaggtccggggttcaaaccc 19479477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 24665055 - 24664979
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||| ||||||  ||| |||| ||| | |||||||||||||||||||||| | |||||||||||  ||||||||||    
T  24665055 ctcgtgagcttagctcagttggtatggagaatgcataatatatgcaaggtccggggttcgaaccccgaccaccacaa 24664979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 24785499 - 24785462
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  24785499 acaatgcataatatatacaaggtctggggttcgaaccc 24785462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 24822767 - 24822804
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  24822767 acaatgcataatatatacaaggtctggggttcgaaccc 24822804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 29568610 - 29568647
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  29568610 acaatgcataatatatgtaaggtccgaggttcgaaccc 29568647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 37800855 - 37800892
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  37800855 acaatgcataatatatgcgaggtctggggttcgaaccc 37800892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 49473669 - 49473706
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| | |||||||||||    
T  49473669 acaatgcataatatatgcaaggtccggggttcgaaccc 49473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 51002284 - 51002345
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||||||| ||| |||| ||  ||||||||||| ||||||||||| |||||||||||    
T  51002284 ctcgtgagcttaactcagttggtatagacaatgcataaaatatgcaaggtttgaggttcgaa 51002345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 56551629 - 56551592
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  56551629 acaatgcataatatatgcaaggtccgaggttcaaaccc 56551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 42074101 - 42074162
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42074101 tcgtgagcttaactcaactggtatgaacaatgcataatatatgcaaggtctgaggttcgaac 42074162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 28430623 - 28430571
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||    
T  28430623 agcttaattcagttggtacgaacaatgcataatatatgcaaggtctgaggttc 28430571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3177040 - 3176985
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctg 81  Q
    |||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||    
T  3177040 gttctcgtaagcttaactcagttggtaggaacaatgcataatatatgcaaggtctg 3176985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 8139712 - 8139773
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| |||||| || | |||| ||| |||||||||||||||||||||||||||||||||||    
T  8139712 ctcgtgagcttagtttagttggtatggacaatgcataatatatgcaaggtctgaggttcgaa 8139773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 52575944 - 52576005
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||||||||  ||| |||| ||||||||||||||| |||||||||||||| ||||||||    
T  52575944 ctcgtaagcttagctcagttggtatgaacaatgcataaaatatgcaaggtctggggttcgaa 52576005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 7938722 - 7938782
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||| |||||| |||| |||| |||||||||||||||||||| ||||||||| ||||||||    
T  7938722 tcgtgagcttagttcagttggtatgaacaatgcataatatatacaaggtctggggttcgaa 7938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 28244168 - 28244104
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| ||| |||| ||||||||||||||| |||||||||||| | |||||||||||    
T  28244168 ctcgtgagcttaactcagttggtatgaacaatgcataaaatatgcaaggtccggggttcgaaccc 28244104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 2153561 - 2153508
Alignment:
Q  33 taagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||||||||||| ||||  || |||||||||||||||||||||||||| ||||    
T  2153561 taagcttaattcagttggtttggacaatgcataatatatgcaaggtctggggtt 2153508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 8075809 - 8075846
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8075809 acaatgcataatatatgcaaggtctgaggttcaaaccc 8075846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 13829114 - 13829077
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  13829114 acaatgcataatatatgcaaggtctggggttcgaaccc 13829077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 25505738 - 25505701
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25505738 acaatgcataatatatgcaaggtctggggttcgaaccc 25505701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 29164820 - 29164740
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaac 104  Q
    ||||||||||| |||||||||||||   ||| |||| ||||||||||||| ||||| ||||| |||||  |||||||||||    
T  29164820 gttctcgtaagtttaattcaattggttggaataatgtataatatatgcaaagtctggggttcaaaccccgaccaccacaac 29164740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 30200850 - 30200887
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30200850 acaatgcataatatatgcaaggtttgaggttcgaaccc 30200887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 35191854 - 35191817
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  35191854 acaatgcataatatatgcaaggtctggggttcgaaccc 35191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 43630473 - 43630424
Alignment:
Q  38 ttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  43630473 ttaactcaattggtatgaacaatgcataatatatgtaaggtttgaggttc 43630424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 45096050 - 45096087
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  45096050 acaatgcataatatatgcaaggtctgtggttcgaaccc 45096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 46253934 - 46253897
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||| |||||||||||||||||||||||||||    
T  46253934 acaatgcatagtatatgcaaggtctgaggttcgaaccc 46253897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 51061051 - 51061116
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| |||||||||| |||||||| ||| |||||||||| ||||||||||||  ||||||| ||||    
T  51061051 ttcttgtaagcttaactcaattggtatggacaatgcatattatatgcaaggttcgaggttcaaacc 51061116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 5702215 - 5702179
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5702215 acaatgcataatatatgcaaggtttgaggttcgaacc 5702179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 14771357 - 14771389
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||||||||    
T  14771357 aatgcataatatatgcaaggtctgaggttcgaa 14771389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 53207995 - 53208031
Alignment:
Q  57 caatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||| |||||||||||    
T  53207995 caatgcataatatatgcaaggtctggggttcgaaccc 53208031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 8942015 - 8942066
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctg 81  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  8942015 tcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaagtctg 8942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 19468454 - 19468509
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||| ||| |||| ||| |||||||||||||||||||||||| | ||||||||    
T  19468454 agcttaactcagttggtatggacaatgcataatatatgcaaggtccgtggttcgaa 19468509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 24273645 - 24273684
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  24273645 gaacaattcataatatatgcaaggtctgaggtttgaaccc 24273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 27397667 - 27397612
Alignment:
Q  38 ttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||| |||| ||| |||||| |||||||||||||||||| ||||||||||||    
T  27397667 ttaactcagttggtatggacaatgtataatatatgcaaggtctaaggttcgaaccc 27397612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 41990623 - 41990584
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  41990623 gaacaatacataatatatgcaaggtccgaggttcgaaccc 41990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 53681916 - 53681877
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  53681916 gaacaatgcataatatatgcaagatttgaggttcgaaccc 53681877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 53996314 - 53996357
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||    
T  53996314 ttggtatggacaatgcataatatatgcaaggtctggggttcgaa 53996357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 4760131 - 4760165
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||| ||||||    
T  4760131 acaatgcataatatatgcaaggtctgagattcgaa 4760165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 14160324 - 14160278
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||||||||||||||||||||| ||| | |||||||||||    
T  14160324 ttggcaagaacaatgcataatatatgcaaagtccggggttcgaaccc 14160278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 19939105 - 19939043
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||| || |||| ||| |||| | ||||||||||||||||||| |||||||| |||||||||    
T  19939105 ctcgtgagattaactcagttggtaagaacaatgcataatatatgaaaggtctggggttcgaac 19939043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 21914129 - 21914071
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| |||| | | ||||||||||||||||||||||| || |||||||||||    
T  21914129 agcttaactcagttggtaaggacaatgcataatatatgcaaggtatggggttcgaaccc 21914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 22722422 - 22722475
Alignment:
Q  52 atgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||||||||||| |||||||||||| ||||||| |||||  ||||||||||    
T  22722422 atgaacaatgcataaaatatgcaaggtccgaggttcaaaccccgaccaccacaa 22722475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 25441546 - 25441500
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  25441546 ttggtatggacaatgcataatatatgcaaggtctggggttcaaaccc 25441500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 38131017 - 38130959
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| |||| ||| |||||||||||||||||||||||| | ||||| |||||    
T  38131017 agcttaactcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 38130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 43490481 - 43490431
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||  ||| |||| ||||||||||||||||||||||||||||    
T  43490481 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggtc 43490431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 48849836 - 48849763
Alignment:
Q  19 gtttgaggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||||| || ||||||| ||| |||| |||| ||||||||||||||||||||||| | ||||| |||||    
T  48849836 gtttgtggttcttgtgagcttaactcagttggtatga-caatgcataatatatgcaaggtccggggttcaaaccc 48849763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 1149106 - 1149069
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||  |||||||||||    
T  1149106 acaatgcataatatatgcaaggtctagggttcgaaccc 1149069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 1757733 - 1757672
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||||||| ||| |||| | |||||||||||||||||||||| ||||| | ||||||    
T  1757733 ctcgtgagcttaactcagttggtaggaacaatgcataatatatgcaacgtctgggattcgaa 1757672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10843848 - 10843795
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||||||| ||||||| ||| |||| ||||| ||| ||||||||||||||||||    
T  10843848 gttctcgtgagcttaactcagttggtatgaataatacataatatatgcaaggtc 10843795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 20400101 - 20400138
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  20400101 acaatacataatatatgcaaggtctgaggttcaaaccc 20400138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 24348409 - 24348442
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||||||||||||||||||||||||| |||||||    
T  24348409 gaacaatgcataatatatgcaaggtcagaggttc 24348442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 28130998 - 28130941
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||| |||||| ||||| ||| | | |||||||||||||||||||||||||| ||||    
T  28130998 ctcgtgagcttagttcaaatggtaaggacaatgcataatatatgcaaggtctggggtt 28130941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 34326050 - 34326001
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaa 75  Q
    |||||||| | ||||||||| |||| ||| ||||||||||||||||||||    
T  34326050 gttctcgtgaacttaattcagttggtatggacaatgcataatatatgcaa 34326001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 38559942 - 38559897
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| ||||||||||||||||||||  ||||||||||||| |||||    
T  38559942 ttggtatgaacaatgcataatatatataaggtctgaggtttgaacc 38559897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 45885510 - 45885477
Alignment:
Q  60 tgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||| |||||    
T  45885510 tgcataatatatgcaaggtctgaggttcaaaccc 45885477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 54230136 - 54230099
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||| || |||||||||||    
T  54230136 acaatgcataatatatgcaaggtttggggttcgaaccc 54230099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 122889 - 122946
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||    
T  122889 tcgtgagcttaactcaattggtatgaacaatgcataatatatgcaaggtctggggttc 122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 119235 - 119201
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||||||||||||| |||||||||||||||||    
T  119235 acaatgcataatatatgtaaggtctgaggttcgaa 119201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 28832238 - 28832177
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| || ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  28832238 gttcttgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtctgaggttc 28832177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 29251778 - 29251815
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29251778 acaatgcataatatatgcaaggtctgaggttcgaaccc 29251815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 16580857 - 16580802
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||||||| |||| ||| |||||| ||||||||||||||||||| ||||||||    
T  16580857 agcttaattcagttggtatggacaatgtataatatatgcaaggtctggggttcgaa 16580802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 17221559 - 17221520
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  17221559 gaacaatgcataatatatgcaaggtccgaggttcgaaccc 17221520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 30561745 - 30561784
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30561745 gaacaatgcataatatatgcaaggtctaaggttcgaaccc 30561784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12522169 - 12522119
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||| |||||    
T  12522169 tcaattggtatgaacaacgcataatatatacaaggtctgaggttcaaaccc 12522119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 18056778 - 18056716
Alignment:
Q  31 cgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||| ||| |||| | | |||||||||||||||||||| || ||||||||||||||    
T  18056778 cgtaagcttaactcagttggtaaggacaatgcataatatatgcaatgtgtgaggttcgaaccc 18056716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 22335373 - 22335419
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| | |||||||||||||||||||||||||||||||| |||||    
T  22335373 ttggcaaggacaatgcataatatatgcaaggtctgaggttcaaaccc 22335419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 28039918 - 28039860
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| |||| | | ||||||||||||||||||||||||||||||| ||||||    
T  28039918 agcttaactcagttggtaaggacaatgcataatatatgcaaggtctgaggtttgaaccc 28039860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 31426757 - 31426819
Alignment:
Q  28 tctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||  ||||| |||||||||||    
T  31426757 tctcgtaaggttagttcaattggcaagaacaatgcataaaatatataaggtttgaggttcgaa 31426819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 35442853 - 35442915
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| |||| || ||| |||| |||||||||||||||||||| ||||||| ||||||||||||    
T  35442853 tcgtgagctaaactcagttggtatgaacaatgcataatatattcaaggtccgaggttcgaacc 35442915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 37050932 - 37050990
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| |||||||| ||||| ||||||||| |||||||||||| | |||||||||||    
T  37050932 agcttaactcaattggtatgaataatgcataaaatatgcaaggtccggggttcgaaccc 37050990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12783751 - 12783702
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||| ||| |||||||||||||||||| |||||| |||||||||||    
T  12783751 tcaattggtatggacaatgcataatatatgcgaggtctaaggttcgaacc 12783702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 30483179 - 30483122
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||| ||||||| |||||| | | ||||||||||||||||| |||||||||||||||    
T  30483179 ctcgtgagcttaactcaattcgtaggaacaatgcataatatacgcaaggtctgaggtt 30483122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 33020080 - 33020043
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  33020080 acaatgcataatatatgcaaggtctgaggttcaaaccc 33020043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 10132481 - 10132445
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10132481 acaatgcataatatatgcaaggtctggggttcgaacc 10132445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 13054897 - 13054933
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13054897 acaatgcataatatatgcaaggtcggaggttcgaacc 13054933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 15382886 - 15382822
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| || ||||||| ||| |||  |||||||||| ||||||||||||||||| ||||||||||    
T  15382886 gttcttgtgagcttaactcagttgatatgaacaatgtataatatatgcaaggtccgaggttcgaa 15382822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 25532970 - 25533034
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||||| |||| |||| ||| |||||||||||||||||||||||| | ||||| |||||    
T  25532970 ctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 25533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 29987167 - 29987100
Alignment:
Q  38 ttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||| ||| |||||| | ||||||||||||||||||||||||||  ||||||||||  ||||||||||    
T  29987167 ttaactcagttggcaaggacaatgcataatatatgcaaggtctggagttcgaaccccaaccaccacaa 29987100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 36467083 - 36467031
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||||||||||||||  ||| ||||||||||||||||||||||| | ||||||    
T  36467083 agcttaattcaattgatatggacaatgcataatatatgcaaggtataaggttc 36467031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 37705130 - 37705186
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||| ||| ||| |||||||||||||||||||| || ||||||||||||||    
T  37705130 cttaactcaactggtatggacaatgcataatatatgcaatgtttgaggttcgaaccc 37705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 39949814 - 39949870
Alignment:
Q  34 aagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||| ||| |||| | |||||||||||||||||| ||||||||| ||||||||    
T  39949814 aagcttaactcagttggtaagaacaatgcataatatatacaaggtctggggttcgaa 39949870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 41362643 - 41362679
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||| ||||||||||||    
T  41362643 acaatgcataatatatgcaaggtcggaggttcgaacc 41362679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 45481496 - 45481552
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||||||| |||| | | |||||||||||||||||||||||| | |||||||||    
T  45481496 agcttaattcatttggtaaggacaatgcataatatatgcaaggtccggggttcgaac 45481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 2665340 - 2665290
Alignment:
Q  56 acaatgcataata-tatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  2665340 acaatgcataataatatgcaaggtctgaggttcgaaccccaaccaccacaa 2665290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 14880852 - 14880883
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||||||||||||||||||||||||||||    
T  14880852 acaatgcataatatatgcaaggtctgaggttc 14880883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 17339212 - 17339263
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtct 80  Q
    ||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||    
T  17339212 ctcgtaagcttaactcagttggtatgaacaatacataatataagcaaggtct 17339263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 32497544 - 32497481
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||||||| ||| |||| | |||||||||||||||||||||||||||  ||||| |||||    
T  32497544 tcgttagcttaactcagttggtaggaacaatgcataatatatgcaaggtctagggttcaaaccc 32497481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 41019736 - 41019701
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcga 89  Q
    |||||||||||||||||||||| |||||||||||||    
T  41019736 gaacaatgcataatatatgcaaagtctgaggttcga 41019701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 5280659 - 5280704
Alignment:
Q  60 tgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||    
T  5280659 tgcataatatatgcaaggtctggggttcgaaccccgaccaccacaa 5280704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 10356251 - 10356185
Alignment:
Q  25 ggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||| |||| ||||||| ||| |||| ||| ||||||||||||||||||| |||| | |||||||||    
T  10356251 ggttatcgtgagcttaactcagttggtatggacaatgcataatatatgcacggtccggggttcgaac 10356185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 12269042 - 12268984
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| | ||||| |||||    
T  12269042 agcttaagtcagttggtaggaacaatgcataatatatgcaaggtccggggttcaaaccc 12268984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 29234011 - 29233962
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||||||| |||||||||||||| |||||||||||  ||||||||||    
T  29234011 acaatgcataaaatatgcaaggtctggggttcgaaccccaaccaccacaa 29233962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 30795723 - 30795761
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  30795723 gaacaatgcataatatatgcaaggtccaaggttcgaacc 30795761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 32944751 - 32944797
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||| |||||||||||||||||||| ||||| |||||||||||    
T  32944751 ttggtatggacaatgcataatatatgcaacgtctggggttcgaaccc 32944797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 34766858 - 34766920
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| ||||||| ||| |||| ||| |||||| |||||| |||||||||||| ||||||||||    
T  34766858 tcgtgagcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaacc 34766920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 41950114 - 41950084
Alignment:
Q  63 ataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||    
T  41950114 ataatatatgcaaggtctgaggttcgaaccc 41950084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 41973258 - 41973316
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| | |||||| | | |||||||||||||||||||||||| | |||||||||||    
T  41973258 agcttaacttaattggtagggacaatgcataatatatgcaaggtccggggttcgaaccc 41973316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 52853072 - 52853030
Alignment:
Q  51 catgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||| |||| | ||||||||||||||    
T  52853072 catgaacaatgcataatatatacaagatttgaggttcgaaccc 52853030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 4770686 - 4770617
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa-cccaccaccacaa 103  Q
    ||||||| ||| |||  ||||||||||||| ||||||  ||||||||||||||||| || ||||||||||    
T  4770686 agcttaactcagttgatatgaacaatgcatgatatatataaggtctgaggttcgaatccgaccaccacaa 4770617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 6000180 - 6000143
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  6000180 acaatgcataatatatgcaaggtccgaggttcaaaccc 6000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 11681247 - 11681284
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  11681247 acaatgcataatatatgcaaggtctggggttcaaaccc 11681284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 21400060 - 21400023
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||  |||||||||||    
T  21400060 acaatgcataatatatgcaaggtcttgggttcgaaccc 21400023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 24752712 - 24752647
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataata-tatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||  ||| |||| ||| ||||||||||||| ||||||||||||| |||||||||||    
T  24752712 ctcgtgagcttagctcagttggtatggacaatgcataataatatgcaaggtctggggttcgaaccc 24752647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 27853347 - 27853416
Alignment:
Q  24 aggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||||| ||||||| ||| |||| |||||||||||||||||||| |||| || | | |||||||||    
T  27853347 aggtcctcgtgagcttaactcagttggtatgaacaatgcataatatatacaagatccgggattcgaaccc 27853416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 29798155 - 29798118
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  29798155 gaacaatgcataatatatgtaaggtctggggttcgaac 29798118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 31338016 - 31338065
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||||||| ||| |||||||||| |||||||||||||| ||||||    
T  31338016 ctcgtgagcttaactcagttggcatgaataatgcataatatatacaaggt 31338065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 35778234 - 35778201
Alignment:
Q  60 tgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| |||||||||||||||||||||||||||||    
T  35778234 tgcacaatatatgcaaggtctgaggttcgaaccc 35778201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 44258836 - 44258775
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||| |||| |||| |||||||||  |||| ||| |||||| |||||||||||    
T  44258836 gtaagcttaattcgattgacatggacaatgcatgttatacgcagggtctgtggttcgaaccc 44258775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 46335092 - 46335059
Alignment:
Q  60 tgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||| |||||    
T  46335092 tgcataatatatgcaaggtctgaggttcaaaccc 46335059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 47528484 - 47528447
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  47528484 acaatgcataatatacgcaaggtccgaggttcgaaccc 47528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 48681997 - 48681948
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||||||  ||| |||| |||||||||||||||||||||||||||    
T  48681997 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggt 48681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 9111044 - 9111108
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||||||| | |||||||||||    
T  9111044 ctcgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaaccc 9111108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 10778834 - 10778898
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||| || |||||||||||| |||  ||||||||||||||||| |||||||||||||||||    
T  10778834 gttctcgtgagtttaattcaattgacatagacaatgcataatatatgtaaggtctgaggttcgaa 10778898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 10278448 - 10278514
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||| ||||| |||||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  10278448 ttctcgtaaacttaactcaattgatatggacaatgcataatatatgcaagatctgaagttcgaaccc 10278514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 12808885 - 12808930
Alignment:
Q  48 tggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  12808885 tggcaagaacaatgcataatatatgcaaggtctggggttcgaaccc 12808930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 2726481 - 2726417
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||||| ||| |||| ||| |||||||||||||||||||||||| | |||||||||||    
T  2726481 ctcgtaaacttaactcagttggtatggacaatgcataatatatgcaaggtccggggttcgaaccc 2726417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 31971526 - 31971590
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||| ||| |||| | | |||||||||||||||||||||||| ||||||| |||||    
T  31971526 ctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttcaaaccc 31971590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 9977060 - 9977130
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||| |||||||| ||| | |||||||||||||||||||||||| ||||| |||||  ||||||||||    
T  9977060 agcttaactcaattggtatggataatgcataatatatgcaaggtctggggttcaaaccctgaccaccacaa 9977130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 28592751 - 28592688
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||| |||||| |||||||||||   ||||||||||||||||| |||||||| ||||||||||    
T  28592751 ctcgtgagcttagttcaattggcaaagacaatgcataatatatgtaaggtctggggttcgaacc 28592688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 12700479 - 12700421
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||  |||| ||||||    
T  12700479 agcttagttcagttggtatgaacaatgcataatatatgcaaggtctagggtttgaaccc 12700421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 34701152 - 34701202
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||| |||| |||| | ||||||||||||||||||||||||||||||||||    
T  34701152 cttagttcagttggtaggaacaatgcataatatatgcaaggtctgaggttc 34701202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 1918525 - 1918460
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||||||| || |||| ||| |||| ||  |||||||||||||||||||||||| |||||||||||    
T  1918525 gttctcgtgagtttaactcagttggtatagacaatgcataatatatgcaaggtccgaggttcgaac 1918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 28951396 - 28951445
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  28951396 ctcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggt 28951445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 8629759 - 8629711
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    |||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  8629759 tcgtgagcttaactcaattggtatggacaatgcataatatatgcaaggt 8629711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 17113498 - 17113466
Alignment:
Q  55 aacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||||||||||||||||||||||||||||||||    
T  17113498 aacaatgcataatatatgcaaggtctgaggttc 17113466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 20744135 - 20744199
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||  ||| |||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  20744135 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcaaaccc 20744199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 30639461 - 30639429
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||||||||    
T  30639461 aatgcataatatatgcaaggtctgaggttcgaa 30639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 8569715 - 8569770
Alignment:
Q  38 ttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| |||||||| ||| |||||||||||||||||||||||| | ||||| |||||    
T  8569715 ttaactcaattggtatggacaatgcataatatatgcaaggtccggggttcaaaccc 8569770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 14049921 - 14049890
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||||||||||||||||||||||||||||    
T  14049921 acaatgcataatatatgcaaggtctgaggttc 14049890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 33938745 - 33938694
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||||| ||||||  ||| |||| |||||||||||||||||||||||||||    
T  33938745 ttctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaaggt 33938694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 2213302 - 2213344
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| |||||||| | ||||||||||||||||||||||||||    
T  2213302 cttaactcaattggtaagaacaatgcataatatatgcaaggtc 2213344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 8637495 - 8637437
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||| |||| | | |||||||||||||||||||||||| ||||||| |||||    
T  8637495 agcttagttcagttggtagggacaatgcataatatatgcaaggtccgaggttcaaaccc 8637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 13496113 - 13496163
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| ||| |||  ||||||||||||||||||||||||||||    
T  13496113 ctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaaggtc 13496163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 15187087 - 15187136
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||||||||||||||||||| ||||||| |||||  ||||||||||    
T  15187087 acaatgcataatatatgcaaggtccgaggttcaaaccccgaccaccacaa 15187136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 15473519 - 15473470
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||||||||||||||||||| ||||||| |||||  ||||||||||    
T  15473519 acaatgcataatatatgcaaggtccgaggttcaaaccccgaccaccacaa 15473470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 16125090 - 16125032
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| ||||||| | | |||| |||||||||||||||||||||||| ||| |||||||    
T  16125090 ctcgtgagcttaaattagttggtatgaacaatgcataatatatgcaaagtccgaggttc 16125032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 32149138 - 32149188
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctga 82  Q
    |||||||||  ||| |||| | |||||||||||||||||||||||||||||    
T  32149138 gtaagcttagctcagttggtaagaacaatgcataatatatgcaaggtctga 32149188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 404187 - 404224
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  404187 acaatgcataatatatgcaatgtccgaggttcgaaccc 404224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 655786 - 655749
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| | |||||||||||    
T  655786 acaatgcataatatatgcaaggtccggggttcgaaccc 655749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 2613516 - 2613553
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  2613516 acaatgcttaatatatgcaaggtctaaggttcgaaccc 2613553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 12412301 - 12412338
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  12412301 acaatgcataatatatgcaaggtctgcggttctaaccc 12412338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 13044677 - 13044628
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||| |||||| |||| |||||||| ||||||||||||||||| ||||||    
T  13044677 tcgttagcttagttcagttggcatggacaatgcataatatatggaaggtc 13044628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 18253382 - 18253353
Alignment:
Q  50 gcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||||||||||||||||||||||||||||    
T  18253382 gcatgaacaatgcataatatatgcaaggtc 18253353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 28046215 - 28046178
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  28046215 acaatgcataatatatgcaaggtttgaggtttgaaccc 28046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 29335639 - 29335586
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctga 82  Q
    ||||| ||||||| ||| || | || ||||||||||||||||||||||||||||    
T  29335639 ctcgtgagcttaactcagttagtataaacaatgcataatatatgcaaggtctga 29335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 34481483 - 34481414
Alignment:
Q  24 aggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||| ||||||||| ||| || | ||||||||||||| |||||||||||||| | ||||| |||||    
T  34481483 aggtcctcataagcttaactcagttagtatgaacaatgcattatatatgcaaggtccggggttcaaaccc 34481414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 34750598 - 34750537
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||| ||| || | |||||||| |||| |||||||||||| ||| |||||||||||    
T  34750598 gtaagcttaactcagttagtatgaacaacgcattatatatgcaaggcctggggttcgaaccc 34750537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 5107309 - 5107245
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| ||| |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  5107309 ctcgtgagcttaactcagttggtatgaataatgcataatatatgcaaggtccgaggttcgaaccc 5107245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 31708192 - 31708147
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||    
T  31708192 ttggtatgaacaatgcataatatatgcaaggtctggggttcgaacc 31708147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 6624773 - 6624837
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||  ||| |||||||| |||||||||||||||||||||||| | |||||||||||    
T  6624773 ctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccggggttcgaaccc 6624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 16089447 - 16089511
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||| |||| |||| ||| |||||||||||||| ||||||||||| | |||||||||    
T  16089447 ctcgtaagcttagttcagttggtatggacaatgcataatatttgcaaggtctgggattcgaaccc 16089511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 32675360 - 32675296
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| || |||||| |||| |||||| |||||||||||||||||||||||||||  ||||||||    
T  32675360 gttcttgtgagcttagttcagttggcaagaacaatgcataatatatgcaaggtctagggttcgaa 32675296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 13864339 - 13864417
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||| ||||||| ||| |||| ||||||||| |||||||||||||||||| | ||||| |||||  ||||||||||    
T  13864339 ttctcgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaaccccgaccaccacaa 13864417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 17144501 - 17144539
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  17144501 gaacaatgcataatatatgcaaggtctgagattcgaacc 17144539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 18589931 - 18589881
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| ||| |||| ||||||||||||||||||||||||||||    
T  18589931 ctcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 18589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 3222755 - 3222792
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3222755 acaatacataatatatgcaaggtctgaggttcgaaccc 3222792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12611085 - 12611036
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  12611085 tcaattggtatggacaatgcataaaatatgcaaggtctggggttcgaacc 12611036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 16579430 - 16579362
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||| ||| |||| |||||||||||||||||||||||||||| | ||||| |||||  ||||||||||    
T  16579430 cttaactcagttggtatgaacaatgcataatatatgcaaggtccgtggttcaaaccctgaccaccacaa 16579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 1538866 - 1538814
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||| |||||||| || ||||| ||||||||||||||||||| |||||||    
T  1538866 agcttaactcaattggtataaacaacgcataatatatgcaaggtccgaggttc 1538814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 11017202 - 11017234
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||||||||    
T  11017202 aatgcataatatatgcaaggtctgaggttcgaa 11017234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 26034675 - 26034623
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||||| |||||    
T  26034675 gttctcgtgagcttaactcagttggtatgaacaatgcataatatatgaaaggt 26034623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 27903107 - 27903159
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    |||||||| || ||| |||| |||| |||||||||||||||||||||||||||    
T  27903107 gttctcgtgagtttagttcagttggtatgaacaatgcataatatatgcaaggt 27903159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 37614377 - 37614329
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccca-ccaccacaa 103  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||    
T  37614377 acaatgcataatatatgcaaggtctgggattcgaacccagccaccacaa 37614329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 37791114 - 37791066
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc-accaccacaa 103  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  37791114 acaatgcataatatatgcaaggtctgggattcgaacccaaccaccacaa 37791066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 37932327 - 37932391
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||  ||| |||| ||| |||||||||||||||||||||||| | |||||||||||    
T  37932327 ctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaaccc 37932391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 13796324 - 13796379
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctg 81  Q
    |||||||| ||||||| ||| | |  ||||||||||||||||||||||||||||||    
T  13796324 gttctcgtgagcttaactcagtcgatatgaacaatgcataatatatgcaaggtctg 13796379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 19759920 - 19759983
Alignment:
Q  23 gaggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||| ||||| ||||||  |||||||| | | |||||||||||||||||||||||| ||||||    
T  19759920 gaggtcctcgtgagcttagctcaattggtaggtacaatgcataatatatgcaaggtccgaggtt 19759983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 25607095 - 25607060
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||||||||||||||||||||||||| |||||||||    
T  25607095 acaatgcataatatatgcaaggtctggggttcgaac 25607060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 31877922 - 31877989
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||| ||||||| ||| |||| ||| ||||||||||||||||||||| || | ||||| |||||    
T  31877922 gttctcgtgagcttaactcacttggtatggacaatgcataatatatgcaagatcaggggttcaaaccc 31877989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 33645753 - 33645679
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc-accaccacaa 103  Q
    ||||| ||||||| ||| |||| ||| |||||| ||||||||||||||||| | ||||||||||| ||||||||||    
T  33645753 ctcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggtc-ggggttcgaacccaaccaccacaa 33645679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 36162943 - 36162896
Alignment:
Q  39 taattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| ||||    
T  36162943 taattcagttggtatgaacaatgcataatatatgtaaggtctggggtt 36162896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 40446007 - 40446038
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||||||||||||||||||||||||||||    
T  40446007 acaatgcataatatatgcaaggtctgaggttc 40446038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 21594450 - 21594400
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| |||||||||||||| | || |||||| ||||||||||||||||||    
T  21594450 ctcgtgagcttaattcaatttgtataaacaatacataatatatgcaaggtc 21594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 21598567 - 21598517
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| |||||||||||||| | || |||||| ||||||||||||||||||    
T  21598567 ctcgtgagcttaattcaatttgtataaacaatacataatatatgcaaggtc 21598517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 22498945 - 22499002
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| |||| | | |||||||||||||||||||||||||| |||||||||||    
T  22498945 agcttaactcagttggtaaggacaatgcataatatatgcaaggtctg-ggttcgaaccc 22499002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 29178441 - 29178518
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc-accaccacaa 103  Q
    |||||||| ||||||| ||| |||| ||| ||||||||||| |||| |||||||||  |||||||||| ||||||||||    
T  29178441 gttctcgtgagcttaactcagttggtatggacaatgcataaaatatacaaggtctg-tgttcgaacccgaccaccacaa 29178518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 39914904 - 39914961
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| |||||||| | | |||||||||||||||||||||||| | |||||||||||    
T  39914904 agcttaactcaattggtaaggacaatgcataatatatgcaaggtccg-ggttcgaaccc 39914961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 40027831 - 40027785
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatg 72  Q
    |||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  40027831 gttctcgtgagcttaactcagttggcatggacaatgcataatatatg 40027785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 40175651 - 40175713
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||| | |||||||| ||| ||||||||||||||||| | | |||| ||||||||||    
T  40175651 tcgtaagcttgactcaattggtatggacaatgcataatatatgtatgatctggggttcgaacc 40175713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 2705555 - 2705518
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  2705555 gaacaatacataatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 87
Target Start/End: Complemental strand, 5974260 - 5974231
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||||||||||||||||||||||||||    
T  5974260 aatgcataatatatgcaaggtctgaggttc 5974231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 6489031 - 6489068
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  6489031 acaatgcataatatatgcaaggtctggggttcaaaccc 6489068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 8350667 - 8350728
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| || |||| ||| |||||||| |||||||||||||||||||| ||||  ||||||||    
T  8350667 ctcgtgagtttaactcagttggcatggacaatgcataatatatgcaaagtctagggttcgaa 8350728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 17046329 - 17046378
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaag 76  Q
    ||||||| ||||||| ||| |||| ||| |||||||||||||||||||||    
T  17046329 ttctcgtgagcttaactcagttggtatggacaatgcataatatatgcaag 17046378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 17465429 - 17465396
Alignment:
Q  59 atgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||||||| ||||||||||    
T  17465429 atgcataatatatgcaaggtctggggttcgaacc 17465396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 20721050 - 20721111
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||| ||| |||| ||| ||||| |||||||||||||||||| | ||||| |||||    
T  20721050 gtaagcttaactcagttggtatggacaatacataatatatgcaaggtccggggttcaaaccc 20721111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 28207129 - 28207190
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||||||  ||| |||| ||| ||||||||||| |||||||||||| ||||||||||    
T  28207129 ctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccgaggttcgaa 28207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 35807774 - 35807741
Alignment:
Q  60 tgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||| ||||||||||||||    
T  35807774 tgcataatatatgcaaggtttgaggttcgaaccc 35807741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 41651002 - 41650953
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||| ||||||| ||| |||| ||| ||||||||||||||||||||||||    
T  41651002 tcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 41650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 42168982 - 42168945
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  42168982 acaatgcatagtatatgcaaggtctggggttcgaaccc 42168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 42505869 - 42505918
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||||||||||  ||| |||| ||| |||||||||||||||||||||||    
T  42505869 ctcgtaagcttagctcagttggtatggacaatgcataatatatgcaaggt 42505918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 42515805 - 42515854
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||| ||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  42515805 tcgtgagcttaattcagttggtatggacaatgcataatatatgtaaggtc 42515854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 2256968 - 2257032
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| ||| |||| ||| |||||||||||||||||||||||||| |||||||||||    
T  2256968 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctggggttcgaaccc 2257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 42475174 - 42475110
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| ||| |||| || |||||||||||| ||||||||||||||||||||||||||    
T  42475174 ctcgtgagcttaactcagttggtataaacaatgcataaaatatgcaaggtctgaggttcgaaccc 42475110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 19549439 - 19549496
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||| |||  ||| |||||||||||||||||||||||||||||||| ||||||||    
T  19549439 agcttaactcagctggtatgaacaatgcataatatatgcaaggtctgagattcgaacc 19549496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 24393269 - 24393306
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24393269 acaatgcataatatatgcaaggtctgaggttcgaaccc 24393306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 12599928 - 12599853
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||||||| ||| || | ||| ||||| |||||||||||||||||||| |||||||||||  ||||||||||    
T  12599928 tcgtaagcttaactcagttagtatggacaatacataatatatgcaaggtctggggttcgaaccccgaccaccacaa 12599853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 32204541 - 32204588
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaag 76  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  32204541 ctcgtgagcttagctcaattggcatgaacaatgcataatatatgcaag 32204588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 43356581 - 43356542
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  43356581 gaacaatgcataatatatgcaaggtccgaggttcgaaccc 43356542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 34903520 - 34903578
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||| |||| | | ||| ||||||||||||||||||||||||||||||||||    
T  34903520 agcttagttcagttggtaaggacagtgcataatatatgcaaggtctgaggttcgaaccc 34903578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 12413517 - 12413554
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  12413517 acaatgcataatatatgcaaggtctgaggttcaaaccc 12413554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 12425577 - 12425614
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  12425577 acaatgcataatatatgcaaggtctgaggttcaaaccc 12425614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 20455888 - 20455949
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||||||  |||||||| ||| |||||||||||||||||||||||| | ||||||||    
T  20455888 ctcgtgagcttagctcaattggtatggacaatgcataatatatgcaaggtccggggttcgaa 20455949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 43117227 - 43117190
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||||| |||||    
T  43117227 acaatgcataatatatgcaaggtctgaggttcaaaccc 43117190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 4531422 - 4531458
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4531422 tcaattggcaagaacaatgcataatatatgcaaggtc 4531458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 6579320 - 6579284
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||| ||||||||    
T  6579320 gaacaatgcataatatatgcaaggtctggggttcgaa 6579284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 27152379 - 27152415
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaaccca 94  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27152379 aatgcataatatatgcaaggtctggggttcgaaccca 27152415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 35727440 - 35727496
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||| ||| |||| | ||||||||||||||||||||||||| || |||||||||    
T  35727440 agcttaactcagttggtaagaacaatgcataatatatgcaaggtttggggttcgaac 35727496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 3503000 - 3503035
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||    
T  3503000 aatgcataatatatgcaaggtctgagattcgaaccc 3503035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 10723965 - 10724000
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||||||| |||||    
T  10723965 aatgcataatatatgcaaggtctgaggttcaaaccc 10724000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 22520239 - 22520278
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  22520239 gaacaatgcataatatatgcaaggcctgaggttcaaaccc 22520278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 25274868 - 25274829
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  25274868 gaacaatgcataatatatgtaaggtctggggttcgaaccc 25274829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 29872228 - 29872173
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| |||| |||| ||||||||| ||||||||||||||||||| |||||| ||||    
T  29872228 cttagttcagttggtatgaacaatacataatatatgcaaggtctaaggttcaaacc 29872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 31815953 - 31815875
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||| ||||||| ||| |||| | | |||||||||||||||||||||||| | ||||| |||||  ||||||||||    
T  31815953 ttctcgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccccgaccaccacaa 31815875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 40096855 - 40096890
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||||||||||||||||||| |||||||||||||||    
T  40096855 acaatgcataatatatgcaaagtctgaggttcgaac 40096890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 41668656 - 41668715
Alignment:
Q  33 taagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||  ||| |||| |||||||||||||||||||||||| |||||  |||||||||    
T  41668656 taagcttagctcagttggtatgaacaatgcataatatatgcaaagtctggcgttcgaacc 41668715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 7640661 - 7640719
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| |||||||| | | ||||| ||||||||||| |||| |||||||||||||||    
T  7640661 agcttaactcaattggtaaggacaatacataatatatgtaaggcctgaggttcgaaccc 7640719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 11428914 - 11428864
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| |||||||| ||| ||||||||||| ||||||||||||    
T  11428914 ctcgtgagcttaactcaattggaatggacaatgcataaaatatgcaaggtc 11428864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 18782578 - 18782544
Alignment:
Q  55 aacaatgcataatatatgcaaggtctgaggttcga 89  Q
    ||||||||||||||||||||||||||| |||||||    
T  18782578 aacaatgcataatatatgcaaggtctggggttcga 18782544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 19159941 - 19159987
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    |||||||||| ||| |||  |||||||||||||||||||||||||||    
T  19159941 gtaagcttaactcagttgatatgaacaatgcataatatatgcaaggt 19159987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 34977201 - 34977251
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| ||| |||| ||| ||||||||||||||||||||||||    
T  34977201 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 34977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 36193984 - 36193950
Alignment:
Q  53 tgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    |||||||||||||| ||||||||||||||||||||    
T  36193984 tgaacaatgcataaaatatgcaaggtctgaggttc 36193950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 38443576 - 38443518
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||| ||| || | |||||||||||||||||||||||||  ||| |||||||||||    
T  38443576 agcttaactcagttcgtatgaacaatgcataatatatgcaagcactgtggttcgaaccc 38443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 41778981 - 41778947
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||| ||||||||||    
T  41778981 acaatgcataatatatgcaaggtccgaggttcgaa 41778947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 7201528 - 7201577
Alignment:
Q  53 tgaacaatgcataatatatgcaaggtctgaggttcgaaccc-accaccac 101  Q
    ||||||||||||||||||||||| |||||  |||||||||| ||||||||    
T  7201528 tgaacaatgcataatatatgcaaagtctggagttcgaacccgaccaccac 7201577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 13196705 - 13196746
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||| |||| |||||||||||||||||||||||||||    
T  13196705 cttaactcagttggtatgaacaatgcataatatatgcaaggt 13196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 22608551 - 22608588
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  22608551 acaatgcataatatatgcaaggtatgaggttcaaaccc 22608588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 23407055 - 23407018
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  23407055 acaatgcataatatatgcaaggtctggggttcaaaccc 23407018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 24592883 - 24592846
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  24592883 acaatgcataatatatgcaaggtctggggttcaaaccc 24592846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 24593400 - 24593437
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| | |||||||||||    
T  24593400 acaatgcataatatatgcaaggtccggggttcgaaccc 24593437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 29133548 - 29133472
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||| |||  ||| |||| ||||||||||||||| ||||||||| |||  |||||||||||  ||||||||||    
T  29133548 ctcgtaagtttagctcagttggtatgaacaatgcataaaatatgcaagatctagggttcgaaccccgaccaccacaa 29133472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 33966326 - 33966367
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||| |||| |||||||||||||||||||||||||||    
T  33966326 cttaactcagttggtatgaacaatgcataatatatgcaaggt 33966367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 39384199 - 39384166
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcga 89  Q
    ||||||||||||||||| ||||||||||||||||    
T  39384199 acaatgcataatatatgtaaggtctgaggttcga 39384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 41526818 - 41526777
Alignment:
Q  51 catgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||| |||||||||| ||||||||||||||| ||||||||||    
T  41526818 catggacaatgcatagtatatgcaaggtctggggttcgaacc 41526777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 5193 - 5255
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  5193 tcaattggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccaaccaccacaa 5255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 45088876 - 45088923
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  45088876 gtaagcttaactcaattggtatgaacaatgcataatatatgcaaggtc 45088923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 6768746 - 6768710
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||||||||||||||||||||||||||||||||    
T  6768746 gaacaatgcataatatatgcaaggtctgaggttcgaa 6768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 31292827 - 31292771
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaac 91  Q
    ||||||| ||| |||| ||||||||||||||||| |||||||||||| |||||||||    
T  31292827 agcttaagtcagttggtatgaacaatgcataatacatgcaaggtctggggttcgaac 31292771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 44410596 - 44410659
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||| |||| |||||||| |||||| ||||||||| ||||||| | |||||||||||    
T  44410596 tcgtaagcttagttcagttggcatggacaatgtataatatatacaaggtccggggttcgaaccc 44410659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 7872785 - 7872747
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccca 94  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  7872785 acaatgcataatatatgcaaggtctggggttcgaaccca 7872747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 9522927 - 9522973
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||    
T  9522927 ttggtatgaacaatgcataatatatgcaaggtttggggttcgaaccc 9522973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 1399159 - 1399235
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||| || |||| ||| |||| ||| ||||||||| |||||||||||||||||| |||||||||  ||||||||||    
T  1399159 ctcgtgagtttaactcagttggtatggacaatgcatgatatatgcaaggtctgagattcgaaccctaaccaccacaa 1399235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 6384875 - 6384912
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6384875 acaatgcataatatatgcaaggtctggggttcgaaccc 6384912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6565519 - 6565580
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| || ||| ||| |||||||| ||||||||||||||| |||||||||||||| |||||    
T  6565519 gttcttgtgagcataactcaattggtatgaacaatgcataaaatatgcaaggtctggggttc 6565580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 34934343 - 34934294
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||| ||||||| |||||||| || |||||||||||||||||||||||||    
T  34934343 tcgtgagcttaactcaattggtataaacaatgcataatatatgcaaggtc 34934294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 34722079 - 34722019
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataat-atatgcaaggtctgaggttcgaaccca 94  Q
    ||||||| ||| |||| |||||||||||||||| ||||| |||||| ||||||||||||||    
T  34722079 agcttaactcagttggtatgaacaatgcataataatatgtaaggtccgaggttcgaaccca 34722019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 21580811 - 21580862
Alignment:
Q  27 ttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||||||||||||| |||||||  ||| ||||||||||||||||| |||||    
T  21580811 ttctcgtaagcttaactcaattgatatggacaatgcataatatatgtaaggt 21580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 25923417 - 25923452
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25923417 aatgcataatatatgcaaggtctgaggtttgaaccc 25923452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 27993093 - 27993042
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtct 80  Q
    ||||| ||||||| ||| |||| ||||||||||||||| |||||||||||||    
T  27993093 ctcgtgagcttaactcagttggtatgaacaatgcataaaatatgcaaggtct 27993042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 32496889 - 32496940
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||||| ||||||    
T  32496889 agcttaactcaattagcatgaacaatacataatatatgtaaggtccgaggtt 32496940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 44558820 - 44558781
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  44558820 ttggtatggacaatgcataatatatgcaaggtctgaggtt 44558781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 48837865 - 48837928
Alignment:
Q  30 tcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| ||||| |||||||| ||| | |||||||||||||||||| || || |||||||||||    
T  48837865 tcgtaaacttaactcaattggtatggataatgcataatatatgcaaagtttggggttcgaaccc 48837928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 5041336 - 5041394
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| ||||||| | | |||| ||| |||||||||||||||||||||||||| |||||    
T  5041336 ctcgtgagcttaactgagttggtatggacaatgcataatatatgcaaggtctggggttc 5041394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 12167412 - 12167454
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    |||||||||||||  |||||||||||||||||||| |||||||    
T  12167412 cttaattcaattgatatgaacaatgcataatatattcaaggtc 12167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 21286361 - 21286411
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||| ||| ||||| |||||||||||||||||||| ||||| |||||    
T  21286361 tcaattggtatggacaatacataatatatgcaaggtctggggttccaaccc 21286411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 37235314 - 37235372
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||| ||||||    
T  37235314 agcttaattcagttgatatggacaatgcatgatatatgcaaggtctgaagtttgaaccc 37235372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 48065199 - 48065249
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtc 79  Q
    ||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||    
T  48065199 ctcgtgagcttaactcaattggtatggacaattcataatatatgcaaggtc 48065249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 2916126 - 2916163
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| | |||||||||    
T  2916126 acaatgcataatatatgcaaggtctgggattcgaaccc 2916163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 3671844 - 3671873
Alignment:
Q  52 atgaacaatgcataatatatgcaaggtctg 81  Q
    ||||||||||||||||||||||||||||||    
T  3671844 atgaacaatgcataatatatgcaaggtctg 3671873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 15018005 - 15018065
Alignment:
Q  32 gtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||| |||||||| | ||| |||| |||||||||||||| ||| ||||||||||||    
T  15018005 gtaagcttaactcaattggtaagaataatgaataatatatgcaagatct-aggttcgaaccc 15018065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 20131840 - 20131905
Alignment:
Q  28 tctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| ||||||  ||| |||||||||||||||||||||||| ||||| | || | |||||||||    
T  20131840 tctcgtgagcttagctcagttggcatgaacaatgcataatatacgcaagttttgggattcgaaccc 20131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 26009302 - 26009335
Alignment:
Q  58 aatgcataatatatgcaaggtctgaggttcgaac 91  Q
    |||||||||||||||||||||||| |||||||||    
T  26009302 aatgcataatatatgcaaggtctggggttcgaac 26009335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 29726797 - 29726846
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||| ||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  29726797 ctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggt 29726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 35142186 - 35142149
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||| || ||||||||||||||    
T  35142186 acaatgcataatatatgcaaagtttgaggttcgaaccc 35142149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 37864449 - 37864482
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcga 89  Q
    |||||||||||||||||||||||||| |||||||    
T  37864449 acaatgcataatatatgcaaggtctggggttcga 37864482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 46987110 - 46987147
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||| | |||||||||||    
T  46987110 acaatgcataatatatgcaaggtccggggttcgaaccc 46987147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 14255 - 14174
Alignment:
Q  24 aggttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||||||||| || |||| ||| |||| ||||||||||||||||||||||||||| || ||||| |||||  ||||||||||    
T  14255 aggttctcgtgagtttaactcagttggtatgaacaatgcataatatatgcaaggtatgtggttcaaaccccgaccaccacaa 14174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 41603065 - 41603122
Alignment:
Q  36 gcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  41603065 gcttaactcaattggtatgaacaatgcataatatatgtaaggtctggggttcaaaccc 41603122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10732839 - 10732775
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| |||||||| |||||||||||||||||||| ||||||   ||||||||||||    
T  10732839 ctcgtgagcttaactcaattggtatgaacaatgcataatatatacaaggttcaaggttcgaaccc 10732775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 31336869 - 31336807
Alignment:
Q  31 cgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||| ||| |||| | |||||||||||||||||||||||||||  ||||| |||||    
T  31336869 cgtaagcttaagtcagttggtaggaacaatgcataatatatgcaaggtctagggttcaaaccc 31336807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 37117588 - 37117530
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||| ||||||  |||||||| |||||||||||||||||||| |||| ||||||||||    
T  37117588 ctcgtgagcttagatcaattggtatgaacaatgcataatatattcaagatctgaggttc 37117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 30623317 - 30623354
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30623317 acaatgcataatatatgcaaggtctggggttcgaaccc 30623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 34420920 - 34420863
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||| |||||||| ||||    
T  34420920 agcttaactcaattggtatggacaatgcataaaatatgcaaggtttgaggttcaaacc 34420863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 38763552 - 38763515
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38763552 acaatgcataatatatgcaaggtctggggttcgaaccc 38763515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 8442545 - 8442493
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttc 87  Q
    ||||||| ||| |||| | | ||||||||||||||||||||||||||||||||    
T  8442545 agcttaactcagttggtaaggacaatgcataatatatgcaaggtctgaggttc 8442493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 56862 - 56819
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||    
T  56862 agcttaactcaattggtatggacaatgcataatatatgcaaggt 56819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 13357505 - 13357442
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||| ||||||| ||| |||| ||| |||||||||||||||||||||||  ||||||| ||||    
T  13357505 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtacgaggttcaaacc 13357442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 32944886 - 32944828
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    |||| ||| ||||||||||| |||||||||||||||||||| |||||  ||||||||||    
T  32944886 ttggtatggacaatgcataaaatatgcaaggtctgaggttcaaaccccgaccaccacaa 32944828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 2181124 - 2181182
Alignment:
Q  28 tctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggtt 86  Q
    |||||| ||||||| | |||||| | ||||||||||||||||||| |||||||| ||||    
T  2181124 tctcgtgagcttaacttaattggtaggaacaatgcataatatatgtaaggtctggggtt 2181182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 8078139 - 8078101
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  8078139 gaacaatgcataatatatgtaaggtctgatgttcgaacc 8078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 12910852 - 12910810
Alignment:
Q  47 ttggcatgaacaatgcataatatatgcaaggtctgaggttcga 89  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  12910852 ttggtatggacaatgcataatatatgcaaggtctaaggttcga 12910810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 92
Target Start/End: Complemental strand, 13032393 - 13032363
Alignment:
Q  62 cataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||||||||||    
T  13032393 cataatatatgcaaggtctgaggttcgaacc 13032363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 39821908 - 39821946
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccca 94  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  39821908 acaatgcataatatatgcaaggtctggggttcaaaccca 39821946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 44019571 - 44019609
Alignment:
Q  54 gaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||||||||||||||||||||| || |||||||||    
T  44019571 gaacaatgcataatatatgcaaggtccgaagttcgaacc 44019609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 45396588 - 45396622
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||||||||||||||||||||||||| |||||||    
T  45396588 acaatgcataatatatgcaaggtctgaagttcgaa 45396622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 1244742 - 1244705
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  1244742 acaatgcataatatatacaaggtctggggttcgaaccc 1244705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 3102311 - 3102368
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    ||||||| | ||||| || |||||||| |||||||||| ||||| |||||||||||||    
T  3102311 agcttaacttaattgacaagaacaatgtataatatatgtaaggtttgaggttcgaacc 3102368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 8148477 - 8148428
Alignment:
Q  43 tcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaacc 92  Q
    |||||||| ||| |||||| |||||||||||||||||| || ||||||||    
T  8148477 tcaattggtatggacaatgtataatatatgcaaggtctaagattcgaacc 8148428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 9656034 - 9655997
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  9656034 acaatgcataaaatatgcaaggtccgaggttcgaaccc 9655997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 10601766 - 10601807
Alignment:
Q  35 agcttaattcaattggcatgaacaatgcataatatatgcaag 76  Q
    ||||||||||| |||| ||| |||||||||||||||||||||    
T  10601766 agcttaattcagttggtatggacaatgcataatatatgcaag 10601807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 18533666 - 18533742
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||||||||| | ||| |||| | ||||||||||||||||||||||| || | ||||| |||||  ||||||||||    
T  18533666 ctcgtaagcttgactcagttggtaagaacaatgcataatatatgcaagatccggggttcaaaccccaaccaccacaa 18533742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 21557430 - 21557491
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    ||||| ||||||| ||| || | ||| ||||||||||||||||| |||||| ||||||||||    
T  21557430 ctcgtgagcttaactcagttagtatggacaatgcataatatatgtaaggtccgaggttcgaa 21557491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 29376898 - 29376974
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||| ||||||| ||| |||| ||| ||||||| ||||||||||||||||||  |||| |||||  ||||||||||    
T  29376898 ctcgtgagcttaactcagttggtatggacaatgcgtaatatatgcaaggtctggagttcaaaccccgaccaccacaa 29376974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 32944949 - 32944986
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  32944949 acaatgcataatatatgcaaggtctgaagttcaaaccc 32944986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 34073792 - 34073755
Alignment:
Q  56 acaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  34073792 acaatgcataatatatgtaaggtctgacgttcgaaccc 34073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 37141362 - 37141403
Alignment:
Q  37 cttaattcaattggcatgaacaatgcataatatatgcaaggt 78  Q
    ||||||||| |||| ||| |||||||||||||||||||||||    
T  37141362 cttaattcagttggtatggacaatgcataatatatgcaaggt 37141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 15994 - 15930
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||| ||||||| |||||||| | | |||||| ||||||||||||||||||| ||||| |||||    
T  15994 ctcgtgagcttaactcaattggtaaggacaatgtataatatatgcaaggtctggggttcaaaccc 15930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 7468 - 7531
Alignment:
Q  26 gttctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaa 90  Q
    |||||||| ||||||| |||||||| ||||||||||||||| ||||| ||| |||| ||||||||    
T  7468 gttctcgtgagcttaactcaattggtatgaacaatgcataaaatatgtaagatctg-ggttcgaa 7531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 22931 - 22972
Alignment:
Q  52 atgaacaatgcataatatatgcaaggtctgaggttcgaaccc 93  Q
    ||||||||||||||| |||||||||||| ||||||| |||||    
T  22931 atgaacaatgcataaaatatgcaaggtccgaggttcaaaccc 22972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 53444 - 53368
Alignment:
Q  29 ctcgtaagcttaattcaattggcatgaacaatgcataatatatgcaaggtctgaggttcgaaccc--accaccacaa 103  Q
    ||||| ||||||| ||| |||| | | ||||||||||| |||||||||||||| ||||| |||||  ||||||||||    
T  53444 ctcgtgagcttaactcagttggaagggacaatgcataaaatatgcaaggtctggggttcaaaccccgaccaccacaa 53368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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