View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_100 (Length: 322)
Name: NF1358_low_100
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_100 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 59 - 293
Target Start/End: Original strand, 12514308 - 12514542
Alignment:
| Q |
59 |
atcataggtcatatattcaagcttcatgtaaatattgtgatggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattac |
158 |
Q |
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| T |
12514308 |
atcataggtcatatattcaagcttcatgtaaatattgtgacggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattac |
12514407 |
T |
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| Q |
159 |
tgcaaaaatataattgttccgtgtattggacagacagttctttgttctgannnnnnnctttaaaattgtacttttaaggagtatatgcctataatttgaa |
258 |
Q |
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| T |
12514408 |
tgcaaaaatataattgttccgtgcattgaacagacagttctttgttctgatttttttctttaaaattatacttttaaggagtatatgcctataatttgaa |
12514507 |
T |
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| Q |
259 |
gagtagtgtttttaactattatttttattcgttaa |
293 |
Q |
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| T |
12514508 |
gagtagtgtttttaactattacttttattcgttaa |
12514542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 32283635 - 32283777
Alignment:
| Q |
66 |
gtcatatattcaagcttcatgtaaatattgtgatggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattactgcaaaa |
165 |
Q |
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| T |
32283635 |
gtcatatattcaagcttcatgtaactattgtgacggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattactgcaaaa |
32283734 |
T |
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| Q |
166 |
atataattgttccgtgtattggacagacagttctttgttctga |
208 |
Q |
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| T |
32283735 |
atataattgttctgtgcattggacagacagttctttgttctga |
32283777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 32283899 - 32283976
Alignment:
| Q |
216 |
ctttaaaattgtacttttaaggagtatatgcctataatttgaagagtagtgtttttaactattatttttattcgttaa |
293 |
Q |
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| T |
32283899 |
ctttaaaattgtacttttaaggagtatatgcctataatttgaagagtagtgtttttaacaattacttttattcgttaa |
32283976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 15702870 - 15703012
Alignment:
| Q |
66 |
gtcatatattcaagcttcatgtaaatattgtgatggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattactgcaaaa |
165 |
Q |
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| T |
15702870 |
gtcatatattcaagcttcatgtaactattgtgacggtagtggatgatgcatttttatctgaacatcattatatattttgagtattattattactgcaaaa |
15702969 |
T |
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| Q |
166 |
atataattgttccgtgtattggacagacagttctttgttctga |
208 |
Q |
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| T |
15702970 |
atataattgttctgtgcattggacagacagttctttgttctga |
15703012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 15703134 - 15703211
Alignment:
| Q |
216 |
ctttaaaattgtacttttaaggagtatatgcctataatttgaagagtagtgtttttaactattatttttattcgttaa |
293 |
Q |
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| T |
15703134 |
ctttaaaattgtacttttaaggagtatatgcctataatttgaagagtagtgtttttaacaattacttttattcgttaa |
15703211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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