View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_101 (Length: 321)
Name: NF1358_low_101
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_101 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 145 - 321
Target Start/End: Original strand, 29284934 - 29285110
Alignment:
| Q |
145 |
acttaaaattcttcattataaattctgcattgagcagtgttaaaactcttatggagagtttgcagctcatttgggttccacaattcttaagggattcaca |
244 |
Q |
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| T |
29284934 |
acttaaaatacttcattataaattctgcattgagcagtgttaaaactcttatggagagcttgcagtccatttgggttccacaatttttaagggattcgca |
29285033 |
T |
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| Q |
245 |
gttgcgcgcggaatacacccagtttacacccnnnnnnntatacaaataccacctaattaatcctgagattttaaaat |
321 |
Q |
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| T |
29285034 |
gttgcgcacggagcacacccagtttacacccaaaaaaatatacgaataccacctaattaatcctgagattttaaaat |
29285110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 29284867 - 29284913
Alignment:
| Q |
99 |
aaaacaattttaaaacctttgtgtgtttggatgaaagaatttctgca |
145 |
Q |
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| T |
29284867 |
aaaacaattttaaaacctttgtgtgtttggatgaaggaatttctgca |
29284913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 36994580 - 36994530
Alignment:
| Q |
177 |
agcagtgttaaaactcttatggagagtttgcagctcatttgggttccacaa |
227 |
Q |
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| T |
36994580 |
agcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaa |
36994530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 31412183 - 31412234
Alignment:
| Q |
177 |
agcagtgttaaaactcttatggagagtttgcagctcatttgggttccacaat |
228 |
Q |
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| T |
31412183 |
agcagtgttaaaactcttagggagagtctgccgcccatttgggttccacaat |
31412234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 7265388 - 7265342
Alignment:
| Q |
182 |
tgttaaaactcttatggagagtttgcagctcatttgggttccacaat |
228 |
Q |
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| T |
7265388 |
tgttaaaactcttagggagagtttgctgctcatttgggtcccacaat |
7265342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 29059866 - 29059929
Alignment:
| Q |
177 |
agcagtgttaaaactcttatggagagtttgcagctcatttgggttccacaattcttaagggatt |
240 |
Q |
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| T |
29059866 |
agcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggatt |
29059929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 18909381 - 18909341
Alignment:
| Q |
177 |
agcagtgttaaaactcttatggagagtttgcagctcatttg |
217 |
Q |
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| T |
18909381 |
agcagtgttaaaactcttagggagaatttgccgctcatttg |
18909341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 2562435 - 2562375
Alignment:
| Q |
167 |
ttctgcattgagcagtgttaaaactcttatggagagtttgcagctcatttgggttccacaa |
227 |
Q |
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| T |
2562435 |
ttctgcatgcagcagcgttacaactcttatgaagagtttggcgctcatttgggtcccacaa |
2562375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 33059800 - 33059756
Alignment:
| Q |
183 |
gttaaaactcttatggagagtttgcagctcatttgggttccacaa |
227 |
Q |
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| T |
33059800 |
gttaaaactcttaaggagagtttgccgcccatttgggtcccacaa |
33059756 |
T |
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