View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_102 (Length: 320)
Name: NF1358_low_102
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_102 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 40074790 - 40074505
Alignment:
| Q |
6 |
acatcatcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaat |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074790 |
acatcttcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaat |
40074691 |
T |
|
| Q |
106 |
tgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074690 |
tgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtc |
40074591 |
T |
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| Q |
206 |
atatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccataagtcttgttttcgaagag |
291 |
Q |
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| T |
40074590 |
atatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccataagtcttgttttcgaagag |
40074505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 40086864 - 40086597
Alignment:
| Q |
6 |
acatcatcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaat |
105 |
Q |
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||||| ||||| |||||||||||| | |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
40086864 |
acatcctcataataccaaataaaatcaactttctcccaaacattacaaagaaaattatcaacatattgttgacccaaatagttagcaccatcaagccaat |
40086765 |
T |
|
| Q |
106 |
tgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtc |
205 |
Q |
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| T |
40086764 |
tgggtcgaagaatacccacatcaaaatgaagccttttgcaagtgtgattaaaagggtcgagagtatagagaaaggaggtgccattgttccattcgaggtc |
40086665 |
T |
|
| Q |
206 |
atatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccata |
273 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
40086664 |
atatttgagaacaccaagctgatattggataatgttgaagttgcgtcctttgggccaatcgtaccata |
40086597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 40080871 - 40080599
Alignment:
| Q |
5 |
gacatcatcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaa |
104 |
Q |
| |
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|||||| ||||||||||| |||||| || | || |||||||||||||| |||||||| |||| || |||||||||||||||||||||||||| ||||||| |
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| T |
40080871 |
gacatcctcatagtaccagataaaatcgtccttttcccaaacattacatagaaaattttcggaatgttgttgacccaaatagttagcaccatgaagccaa |
40080772 |
T |
|
| Q |
105 |
ttgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggt |
204 |
Q |
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|||||| || ||| ||| |||||| | ||| ||||| ||| ||| ||||||||| || | |||||||| ||||| ||| | ||||||||| |||||| |
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| T |
40080771 |
ttgggtggtagaacacccacatcaaaatgaagcacttcgcatgtggagttgaaagggtcaacagtgtagaaaaaggaggtacggttgttccatgcaaggt |
40080672 |
T |
|
| Q |
205 |
catatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccataagtc |
277 |
Q |
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| T |
40080671 |
cgtatttgagaataccaagctggttctggaaaatgttgaagatgcgtccgttgggccaatcataccagaagtc |
40080599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 47392566 - 47392851
Alignment:
| Q |
6 |
acatcatcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaat |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47392566 |
acatcttcatagtaccaaataaaaccgactttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaat |
47392665 |
T |
|
| Q |
106 |
tgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47392666 |
tgggtcgtggaataccaacatcatattgagtcacttggcaagtgtggttgaaaggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtc |
47392765 |
T |
|
| Q |
206 |
atatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccataagtcttgttttcgaagag |
291 |
Q |
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| T |
47392766 |
atatttgagaacatcaagctgatattggataatattgaagtttcgtccattgggccaatcgtaccataagtcttgttttcgaagag |
47392851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 44973359 - 44973238
Alignment:
| Q |
159 |
ggatcgagagtgtagagaaaggtggtgccattgttccattcaaggtcatatttgagaacatca---agctgatattggataatattgaagtttcgtccat |
255 |
Q |
| |
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|||| ||||||||| | |||| ||| |||||| ||||||||||||| || | | ||||||| || |||| |||||| |||||||||||||| || | |
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| T |
44973359 |
ggatggagagtgtacatgaaggaggttccattggtccattcaaggtcgtaatctacaacatcattgagttgatcttggatgatattgaagtttcgaccgt |
44973260 |
T |
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| Q |
256 |
tgggccaatcgtaccataagtc |
277 |
Q |
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||||||| |||||||||||||| |
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| T |
44973259 |
tgggccagtcgtaccataagtc |
44973238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 44973485 - 44973412
Alignment:
| Q |
33 |
actttctcccaaacattacacagaaaattgtcggcatattgttgacccaaatagttagcaccatcaagccaatt |
106 |
Q |
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|||||||||||||||||||| || ||||| || | | || ||||||||||||| ||||||| ||||||||||| |
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| T |
44973485 |
actttctcccaaacattacataggaaattatcaacttgttcttgacccaaataggtagcaccgtcaagccaatt |
44973412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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