View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_112 (Length: 301)

Name: NF1358_low_112
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_112
NF1358_low_112
[»] chr4 (10 HSPs)
chr4 (30-294)||(5734644-5734911)
chr4 (127-257)||(18708038-18708167)
chr4 (128-257)||(18669268-18669396)
chr4 (133-257)||(18715284-18715407)
chr4 (133-251)||(36801504-36801620)
chr4 (133-257)||(10394228-10394350)
chr4 (161-242)||(7777198-7777279)
chr4 (133-257)||(9045724-9045846)
chr4 (161-257)||(18735544-18735641)
chr4 (160-226)||(36002899-36002964)
[»] chr3 (5 HSPs)
chr3 (30-294)||(18658425-18658692)
chr3 (127-257)||(34661160-34661288)
chr3 (164-257)||(31174271-31174363)
chr3 (126-217)||(10427164-10427253)
chr3 (159-216)||(7249394-7249451)
[»] chr5 (7 HSPs)
chr5 (127-254)||(41817810-41817935)
chr5 (128-257)||(28662539-28662666)
chr5 (117-257)||(19576794-19576932)
chr5 (127-243)||(20070816-20070930)
chr5 (133-257)||(37042179-37042301)
chr5 (152-257)||(43361007-43361112)
chr5 (121-257)||(22578552-22578684)
[»] scaffold0003 (1 HSPs)
scaffold0003 (127-257)||(303390-303518)
[»] chr7 (12 HSPs)
chr7 (121-257)||(20389031-20389165)
chr7 (133-257)||(16649224-16649346)
chr7 (133-257)||(17623585-17623707)
chr7 (127-254)||(6961455-6961577)
chr7 (128-257)||(28755160-28755282)
chr7 (179-257)||(30781365-30781443)
chr7 (116-222)||(4248485-4248589)
chr7 (163-257)||(22493705-22493799)
chr7 (113-257)||(24779284-24779433)
chr7 (127-229)||(25174609-25174709)
chr7 (127-207)||(29501769-29501847)
chr7 (256-288)||(39135092-39135124)
[»] chr6 (6 HSPs)
chr6 (128-257)||(31968670-31968796)
chr6 (126-255)||(1397782-1397909)
chr6 (117-242)||(13404975-13405098)
chr6 (159-260)||(7536862-7536961)
chr6 (158-239)||(7524288-7524371)
chr6 (159-218)||(2064534-2064593)
[»] chr2 (5 HSPs)
chr2 (127-241)||(31643211-31643323)
chr2 (133-257)||(29141558-29141680)
chr2 (164-257)||(29035110-29035203)
chr2 (152-218)||(17525701-17525767)
chr2 (133-176)||(29034923-29034964)
[»] chr1 (6 HSPs)
chr1 (176-255)||(21852357-21852436)
chr1 (159-257)||(9246553-9246651)
chr1 (128-257)||(45040264-45040393)
chr1 (135-257)||(25030616-25030736)
chr1 (127-257)||(32540204-32540332)
chr1 (147-242)||(12882475-12882572)
[»] chr8 (9 HSPs)
chr8 (127-257)||(11636152-11636280)
chr8 (171-257)||(36109178-36109264)
chr8 (147-257)||(8995375-8995485)
chr8 (113-257)||(17836840-17836983)
chr8 (138-216)||(32017619-32017695)
chr8 (147-236)||(25382494-25382585)
chr8 (159-227)||(33180178-33180246)
chr8 (113-185)||(6599753-6599823)
chr8 (113-185)||(6675206-6675276)
[»] scaffold0028 (1 HSPs)
scaffold0028 (159-217)||(33454-33512)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 5734911 - 5734644
Alignment:
Q  30 ttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaaggnnnnnnnntaaaat---tcgggtgaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    |||| ||||    
T  5734911 ttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaagaaaaaaaaaaaaaaaaactcggatgaa 5734812  T
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5734811 ccactaaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaagttagggtg 5734712  T
Q  227 gatatttaaaaaattacgaatttaacaactaatactacccccgtccctaattacaagaccctatgcta 294  Q
     ||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  5734711 tatacttaaaaaatgaccaatttaacaactaatactacccccgtccctaattataagaccctttgcta 5734644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 18708167 - 18708038
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggt 225  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  18708167 ccactaaaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggt 18708070  T
Q  226 ggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||||||||| ||||||| ||||||||||||    
T  18708069 ggatatttaaataattacgtatttaacaacta 18708038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 18669396 - 18669268
Alignment:
Q  128 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18669396 cactaaaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggtg 18669299  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
    |||| ||||| ||||||| ||||||||||||    
T  18669298 gatacttaaataattacgtatttaacaacta 18669268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 18715407 - 18715284
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacga-agttgaaatgacggagtttgactaaaaaattagggtggatat 231  Q
    ||||||||||||||||||  ||||| |||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||| ||||||||||||     
T  18715407 aaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcgagttgaaatgacggagtttgactaaaaagttagggtggatac 18715310  T
Q  232 ttaaaaaattacgaatttaacaacta 257  Q
    ||||| ||||||| ||||||||||||    
T  18715309 ttaaataattacgtatttaacaacta 18715284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 36801504 - 36801620
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||| || | |||||||||| ||||| ||| |||||||| |    
T  36801504 aaattaattataatatat--aaacataaattaaagttgtaataaacattaagtacgaagttgagataaaggagtttgaccaaaaacttacggtggatact 36801601  T
Q  233 taaaaaattacgaatttaa 251  Q
    |||| |||||| |||||||    
T  36801602 taaataattacaaatttaa 36801620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 10394350 - 10394228
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    ||||||||||||||||||   |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||   ||||| | |||| |    
T  10394350 aaattaattataatatatt--aacacaaattaatgttgtaataagcattaagtacgaagttgaaatgaaggagtttgactaaattgttaggatagatact 10394253  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| ||||||  ||||||| ||||    
T  10394252 taaataattacatatttaactacta 10394228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 7777279 - 7777198
Alignment:
Q  161 attaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaatta 242  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| || ||| ||||| |||||    
T  7777279 attaaaattgtaataagcattaagtacgaagttgaaatgacggagtttgactaaacagttaggatgtatacttaaataatta 7777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 9045724 - 9045846
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||  |||||| | |||||||||||| ||  |||||||||||||  ||||||||||| |    
T  9045724 aaataaattataatatat--aaacacaaattaaagttgtaataaacattaagcaagaagttgaaatggcgatgtttgactaaaaagctagggtggatagt 9045821  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| || |||  |||| |||||||    
T  9045822 taaataactacatattttacaacta 9045846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 18735641 - 18735544
Alignment:
Q  161 attaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    |||||||||||||| |  |||||||||  ||||||||||||| ||||||||||||||| | |||||||||| ||||| ||||||  ||||||||||||    
T  18735641 attaaagttgtaatcaacattaagtacttaagttgaaatgacagagtttgactaaaaagtaagggtggatacttaaataattacatatttaacaacta 18735544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 36002964 - 36002899
Alignment:
Q  160 aattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    |||||||||||||||||||||||   || | |||||||||||| |||||||||| ||||||||||||    
T  36002964 aattaaagttgtaataagtattagacacaatgttgaaatgacgaagtttgacta-aaaattagggtg 36002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 18658692 - 18658425
Alignment:
Q  30 ttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaaggnnnnnnnntaaaat---tcgggtgaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    |||| ||||    
T  18658692 ttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaagaaaaaaaaaaaaaaaaactcggatgaa 18658593  T
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18658592 ccactaaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaagttagggtg 18658493  T
Q  227 gatatttaaaaaattacgaatttaacaactaatactacccccgtccctaattacaagaccctatgcta 294  Q
     ||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  18658492 tatacttaaaaaatgaccaatttaacaactaatactacccccgtccctaattataagaccctttgcta 18658425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 34661288 - 34661160
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||  ||| | ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||  ||||    
T  34661288 ccactaaaattaattataatatat--aaatacaaattaaagttgtaataaacattaagtacgaagttgaaatgacagagtttgactaaaaagtttaggtg 34661191  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
    |||| ||||| ||||||  ||||||||||||    
T  34661190 gatacttaaataattacatatttaacaacta 34661160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 31174271 - 31174363
Alignment:
Q  164 aaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||| ||||||||||||    
T  31174271 aaagttgtaataagtattaagaacgaagttgaaatgacggagtttgactaaaaagttaaggtgaatatttataaagttacg-atttaacaacta 31174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 10427164 - 10427253
Alignment:
Q  126 accactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaa 217  Q
    |||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  10427164 accactaaaattaattataatatat--aaacacaaattaaagttgtaataagtattaattacgaagttgaaatgacatagtttgactaaaaa 10427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 7249451 - 7249394
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 216  Q
    |||||||||||||||||| |||||||   ||||||||| ||| | |||||||||||||    
T  7249451 aaattaaagttgtaataaatattaagcgtgaagttgaagtgatgaagtttgactaaaa 7249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 41817935 - 41817810
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||  ||||| |||||||| |||||||||  |||||||| |||||||||||||||||||||||||||||  |||||||     
T  41817935 ccactaaaattaattataatatat--aaacacaaattaaaattgtaataaacattaagtatgaagttgaaatgacggagtttgactaaaatgttagggta 41817838  T
Q  227 gatatttaaaaaattacgaatttaacaa 254  Q
    |||||||| ||||||||| |||||||||    
T  41817837 gatatttataaaattacgtatttaacaa 41817810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 28662666 - 28662539
Alignment:
Q  128 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 227  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| ||| ||||     
T  28662666 cactaaaattaattataatatat--aagcataaattaaagttgtaataagcattaaatacggagttgaaatgacggagtttgattaaaaagttatggtga 28662569  T
Q  228 atatttaaaaaattacgaatttaacaacta 257  Q
    ||| ||||| ||||||  ||||||||||||    
T  28662568 atacttaaataattacatatttaacaacta 28662539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 19576794 - 19576932
Alignment:
Q  117 ttcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 216  Q
    ||||||||  ||||| ||||||||||||||||||  ||||| ||||||||||||||||| | || |||||||||||||||||||| || |||||||||||    
T  19576794 ttcgggtgggccactaaaattaattataatatat--aaacacaaattaaagttgtaatacgcataaagtacgaagttgaaatgacagaatttgactaaaa 19576891  T
Q  217 aattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    | || ||||| ||| ||||| ||||||  ||||||||||||    
T  19576892 agtttgggtgaatacttaaataattacatatttaacaacta 19576932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 20070816 - 20070930
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| |||| |||||||||||||  ||| |||||||||||||||||||||||||||  || |||||||||| | |||||||||||||||| ||||||||    
T  20070816 ccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaacacaaagttgaaataatggagtttgactaaaaagttagggtg 20070913  T
Q  227 gatatttaaaaaattac 243  Q
    |||| ||||| ||||||    
T  20070914 gatacttaaataattac 20070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 37042179 - 37042301
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    ||||||||||||||||||  | ||| ||||| ||||||||||||| ||| | |||||||||||||| ||  |||||||||||||| ||||| |||||  |    
T  37042179 aaattaattataatatat--agacacaaatttaagttgtaataagcatttaatacgaagttgaaataacaaagtttgactaaaaagttaggatggatgct 37042276  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| | ||||  ||||||||||||    
T  37042277 taaatagttacatatttaacaacta 37042301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 43361007 - 43361112
Alignment:
Q  152 taaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaa 251  Q
    |||||| ||||||||||||||||||| || |||||| ||||| ||||| | ||||||| ||| ||| |||||||| ||| ||||| ||||||  ||||||    
T  43361007 taaacacaaattaaagttgtaataagcatcaagtaccaagttaaaatgtcagagtttggctataaagttagggtgtatacttaaataattacatatttaa 43361106  T
Q  252 caacta 257  Q
    ||||||    
T  43361107 caacta 43361112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 22578552 - 22578684
Alignment:
Q  121 ggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaatt 220  Q
    |||| |||||| |||| |||||||||||||    | |||||||||| | |||||||| || ||  | ||||||||||||||||||||||||||||||  |    
T  22578552 ggtggaccactaaaataaattataatatat----aaataaattaaaatcgtaataaggatcaaacatgaagttgaaatgacggagtttgactaaaaaggt 22578647  T
Q  221 agggtggatatttaaaaaattacgaatttaacaacta 257  Q
    || ||| ||||||||| ||||||  |||| |||||||    
T  22578648 agagtgaatatttaaataattacatattttacaacta 22578684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 303390 - 303518
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| |||| |||||||||||||  ||| |||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||| ||||||||    
T  303390 ccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaacacaaagttgaaatgatggagtttgactaaaaagttagggtg 303487  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
    |||| ||||| ||||||  |||| |||||||    
T  303488 gatacttaaataattacatattttacaacta 303518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 20389031 - 20389165
Alignment:
Q  121 ggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaatt 220  Q
    |||| |||||| |||| |||||||||||||  ||| ||||||||||||||||||||||||||| ||| |||||||||| | || ||||||||||||| ||    
T  20389031 ggtggaccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaatacaaagttgaaattatggggtttgactaaaaagtt 20389128  T
Q  221 agggtggatatttaaaaaattacgaatttaacaacta 257  Q
    |||||||||| ||||| ||||||  |||| |||||||    
T  20389129 agggtggatacttaaataattacatattttacaacta 20389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 16649224 - 16649346
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||  |||||||||||||||||||| || |||||| |||||||| |||||||||||| |    
T  16649224 aaattaattataatatat--aaacacaaattaaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatact 16649321  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| |||  |  ||||||||||||    
T  16649322 taaataatagcatatttaacaacta 16649346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 17623585 - 17623707
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||  |||||||||||||||||||| || |||||| |||||||| |||||||||||| |    
T  17623585 aaattaattataatatat--aaacacaaattaaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatact 17623682  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| |||  |  ||||||||||||    
T  17623683 taaataatagcatatttaacaacta 17623707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 6961577 - 6961455
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||||||||| |   ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  6961577 ccactaaaattaattataatatat--aaacacaaattaaagttgtaataagca---agtacaaagttgaaatggcggagtttgactaaaaagttagggtg 6961483  T
Q  227 gatatttaaaaaattacgaatttaacaa 254  Q
     ||| ||||| ||||||  |||||||||    
T  6961482 aatacttaaataattacatatttaacaa 6961455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 28755282 - 28755160
Alignment:
Q  128 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 227  Q
    |||| ||||||||||||||||||   || | ||||||||||||||||||||||||||||| |||||||||||| ||||||||    |||  ||||| |||    
T  28755282 cactaaaattaattataatatat---aatacaaattaaagttgtaataagtattaagtacaaagttgaaatgatggagtttg----aaatgttaggctgg 28755190  T
Q  228 atatttaaaaaattacgaatttaacaacta 257  Q
    ||| ||||| ||||||| ||||||||||||    
T  28755189 atacttaaataattacgtatttaacaacta 28755160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 30781443 - 30781365
Alignment:
Q  179 attaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||  ||||||||||||    
T  30781443 attaagtacaaagttgaaatgacgaagtttgactaaaaaattaaggtggatatttaaacaattacatatttaacaacta 30781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 4248485 - 4248589
Alignment:
Q  116 attcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaa 215  Q
    ||||||||| ||||||||||  |||||||||||||  ||| | ||||||||||| ||||||| |||||  ||||||||||||||||| ||||||||||||    
T  4248485 attcgggtggaccactgaaacaaattataatatat--aaatacaaattaaagttataataagcattaaacacgaagttgaaatgacgaagtttgactaaa 4248582  T
Q  216 aaattag 222  Q
    || ||||    
T  4248583 aagttag 4248589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 257
Target Start/End: Original strand, 22493705 - 22493799
Alignment:
Q  163 taaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||||||||||||  |||||||||| ||||||| ||||| |||||||||||||| ||||||| |||| ||||| ||||||  ||||||||||||    
T  22493705 taaagttgtaataaacattaagtacgtagttgaattgacgaagtttgactaaaaagttagggttgatacttaaataattacatatttaacaacta 22493799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 24779284 - 24779433
Alignment:
Q  113 aaaattcgggtgaaccactgaaattaattataat-----atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtt 207  Q
    ||||||||||||  ||||| ||||||||||||||     |||| || | | |||||||| ||||| |||| ||||| || ||||||||||||||||||||    
T  24779284 aaaattcgggtgggccactaaaattaattataatttataatatatagatacaaattaaatttgtattaagcattaaatatgaagttgaaatgacggagtt 24779383  T
Q  208 tgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    || ||||||| |||   |||||| ||| ||||||||| ||||||||||||    
T  24779384 tggctaaaaagttataatggatacttataaaattacgtatttaacaacta 24779433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 25174709 - 25174609
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| |||| |||||||||||||  ||||||||| |||||| |||||||   || |  | |||||||||||||||||||||||||||||| ||||||||    
T  25174709 ccactaaaataaattataatatat--aaacataaaataaagtagtaataaacgttcaccatgaagttgaaatgacggagtttgactaaaaagttagggtg 25174612  T
Q  227 gat 229  Q
    |||    
T  25174611 gat 25174609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 29501769 - 29501847
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtt 207  Q
    ||||| |||||||||| |||||||  ||||| |||||||||||||||| |  |||||||||||||| |||||||| |||||    
T  29501769 ccactaaaattaattacaatatat--aaacacaaattaaagttgtaattaacattaagtacgaagtcgaaatgacagagtt 29501847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 39135092 - 39135124
Alignment:
Q  256 taatactacccccgtccctaattacaagaccct 288  Q
    |||||||||| ||||||||||||||||||||||    
T  39135092 taatactacctccgtccctaattacaagaccct 39135124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 31968670 - 31968796
Alignment:
Q  128 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt-acgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||  ||||||| | |||||| ||||||  |||| |||||||||||||||||||    
T  31968670 cactaaaattaattataatatat--aaacataaattaaagttgtaataaacattaagtcatgaagttaaaatga--gagtctgactaaaaaattagggtg 31968765  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
    |||| ||| ||||||||| ||||||||||||    
T  31968766 gatacttataaaattacgtatttaacaacta 31968796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 1397782 - 1397909
Alignment:
Q  126 accactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggt 225  Q
    |||||| ||||||||||||||||||  ||||| |||||||| || |||||||||||| || ||||||||||||||| || ||| | |||||| ||||| |    
T  1397782 accactaaaattaattataatatat--aaacacaaattaaaattataataagtattatgtgcgaagttgaaatgacagaatttaattaaaaagttaggat 1397879  T
Q  226 ggatatttaaaaaattacgaatttaacaac 255  Q
    | ||| ||| ||||||||  ||||||||||    
T  1397880 gaatacttataaaattacttatttaacaac 1397909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 13404975 - 13405098
Alignment:
Q  117 ttcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 216  Q
    ||||||||| ||| | |||| ||||||||| |||  ||||| ||||||||    ||||||| |||||  |||||||||||||||| ||||||||||||||    
T  13404975 ttcgggtgagccattaaaataaattataatttat--aaacacaaattaaaaacataataagcattaaacacgaagttgaaatgactgagtttgactaaaa 13405072  T
Q  217 aattagggtggatatttaaaaaatta 242  Q
    || |||| |||||| ||||| |||||    
T  13405073 aactaggatggatacttaaataatta 13405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 7536961 - 7536862
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaactaa 258  Q
    ||||||||||||||| ||  ||||||| ||||||||||||||  ||||||||||||||| | ||  |||||| ||||| |||| |  |||||||||||||    
T  7536961 aaattaaagttgtaacaaacattaagtgcgaagttgaaatga--gagtttgactaaaaagtaagtctggatacttaaataattgcatatttaacaactaa 7536864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 7524371 - 7524288
Alignment:
Q  158 taaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaa-aaaattagggtggata-tttaaaaaa 239  Q
    |||||||||||||||||||  |||| | ||||||||||||||  ||||||| ||||| |||| ||||||||||| |||||||||    
T  7524371 taaattaaagttgtaataatcattatgcacgaagttgaaatggtggagttttactaagaaaactagggtggatactttaaaaaa 7524288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 2064534 - 2064593
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaa 218  Q
    ||||||||||| ||||||| |||||  ||| | |||||||| ||||||||||||||||||    
T  2064534 aaattaaagttataataagcattaaacacggatttgaaatggcggagtttgactaaaaaa 2064593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 31643211 - 31643323
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||| |||| |||||||||| ||    
T  31643211 ccactaaaattaattataatatat--aaacacaaattaaagttgtaataagcattaaatacgaagttgaactgacggagttcgactgaaaaattaggatg 31643308  T
Q  227 gatatttaaaaaatt 241  Q
    |||| ||||| ||||    
T  31643309 gatacttaaataatt 31643323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 29141558 - 29141680
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 232  Q
    |||| |||||||||||||  ||||| |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||  |||||||||||||    
T  29141558 aaataaattataatatat--aaacacaaattaaagtcgtaataaacattaagcacgaagttgaaatgatggagtttgactaaaaagatagggtggatatt 29141655  T
Q  233 taaaaaattacgaatttaacaacta 257  Q
    |||| ||||||  |||| |||||||    
T  29141656 taaataattacatatttgacaacta 29141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 29035110 - 29035203
Alignment:
Q  164 aaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||| ||||||||| ||||||||||||    
T  29035110 aaagttgtaataaacattaagtacgaagttgaaatgacggagtttgactacaaagttaaggtgaatacttataaaattacgtatttaacaacta 29035203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 17525701 - 17525767
Alignment:
Q  152 taaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaa 218  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  17525701 taaacacaaattaaagttgtaataagcattaagcacgaagttgaaatgacggtgtttgactaaaaaa 17525767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 29034923 - 29034964
Alignment:
Q  133 aaattaattataatatatgtaaacataaattaaagttgtaataa 176  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||    
T  29034923 aaattaattataatatat--aaacacaaattaaagttgtaataa 29034964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 21852436 - 21852357
Alignment:
Q  176 agtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaac 255  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  21852436 agtattaagtacgaagttgaaatgacggagtttaactaaaaagttagggtggatacttaaataattacgtatttaacaac 21852357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 9246553 - 9246651
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    |||||||| | |||||||| ||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||| ||||||  ||||||||||||    
T  9246553 aaattaaaatggtaataagcattaagtacgaagttgaaatgatagagtttgattaaaaatttagggtggatatttaaataattacatatttaacaacta 9246651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 45040264 - 45040393
Alignment:
Q  128 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagta--ttaagtacgaagttgaaatgacggagtttgactaaaaaattagggt 225  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||  |  ||||||| ||||||||||||||| |||||||||||||  |||||      
T  45040264 cactaaaattaattataatatat--aaacataaattaaagttgtaataaaaacattaagtaagaagttgaaatgacgaagtttgactaaaaggttaggac 45040361  T
Q  226 ggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||| ||||| |||||   ||||||||||||    
T  45040362 ggatacttaaataattatatatttaacaacta 45040393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 25030736 - 25030616
Alignment:
Q  135 attaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatattta 234  Q
    ||||||||||||||||  ||||| ||||||| ||||||||||| |||||  | ||| ||||| |||||||||||||||||||| ||| |||||||| |||    
T  25030736 attaattataatatat--aaacacaaattaaggttgtaataagcattaaagatgaaattgaattgacggagtttgactaaaaagttaaggtggatactta 25030639  T
Q  235 aaaaattacgaatttaacaacta 257  Q
    || ||||||   |||||||||||    
T  25030638 aataattacatctttaacaacta 25030616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 32540204 - 32540332
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| |||| |||||||||||||  ||||| |||||||||| |||||||| |||||  |||||||||||| || ||||||||||||||||  |||| ||    
T  32540204 ccactaaaataaattataatatat--aaacacaaattaaagtcgtaataagcattaaacacgaagttgaaacgatggagtttgactaaaaagctaggatg 32540301  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
     ||||||||| ||||||  |||| |||||||    
T  32540302 aatatttaaataattacatattttacaacta 32540332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 12882475 - 12882572
Alignment:
Q  147 atatgtaaacataaa-ttaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggat-atttaaaaaatta 242  Q
    ||||||||||||||| ||||||| |||||||| |||||| | |||||||||||  |  | |||||||||||| || |||| |||  ||||||||||||    
T  12882475 atatgtaaacataaaattaaagtagtaataagcattaagcatgaagttgaaattgcaaaatttgactaaaaagttcgggttgatgctttaaaaaatta 12882572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 11636280 - 11636152
Alignment:
Q  127 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 226  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||| |||| ||||  |||||| ||||||||||| ||||| |||||||| ||||| ||    
T  11636280 ccactaaaattaattataatatat--aaacacaaattaaagttgtagtaagcattatatacgaatttgaaatgacgaagtttaactaaaaagttaggttg 11636183  T
Q  227 gatatttaaaaaattacgaatttaacaacta 257  Q
     ||| ||||| ||||||  ||||||||||||    
T  11636182 tatacttaaataattacatatttaacaacta 11636152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 36109264 - 36109178
Alignment:
Q  171 taataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||  ||||||||||||    
T  36109264 taataagcattaattacgaagttgaaatgatggagtttgactaaaaagttagggtggatacttaaataattacatatttaacaacta 36109178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 8995485 - 8995375
Alignment:
Q  147 atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaa 246  Q
    |||| |||||| ||||||||||||||||||  |||||  ||||||||||||||| |||||||||||||||| ||| ||| |||| ||||| ||||||  |    
T  8995485 atatttaaacacaaattaaagttgtaataaacattaaacacgaagttgaaatgatggagtttgactaaaaacttatggttgatacttaaataattacata 8995386  T
Q  247 tttaacaacta 257  Q
    ||| |||||||    
T  8995385 ttttacaacta 8995375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 17836983 - 17836840
Alignment:
Q  113 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgact 212  Q
    |||||||||  | |||||| ||||||||||||||||||  ||| | |||||||| || ||||||| ||||| |||||||||||||| |||||||||| |     
T  17836983 aaaattcggacggaccactaaaattaattataatatat--aaatacaaattaaaattataataagcattaattacgaagttgaaataacggagtttggca 17836886  T
Q  213 aaaa-aattagggtggatatttaaaaaattacgaatttaacaacta 257  Q
    |||| | |||| ||||||| ||||| ||||||  ||||||| ||||    
T  17836885 aaaacagttagagtggatacttaaataattacatatttaacgacta 17836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 32017619 - 32017695
Alignment:
Q  138 aattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 216  Q
    |||||||||||||  ||| | |||||||| |||||||||| |||||||||  |||||||||||||||||||||||||||    
T  32017619 aattataatatat--aaatacaaattaaaattgtaataagcattaagtacagagttgaaatgacggagtttgactaaaa 32017695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 25382494 - 25382585
Alignment:
Q  147 atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg--acggagtttgactaaaaaattagggtggatatttaaa 236  Q
    |||| |||| ||||||||||||||||||||  || ||||||||||||||||||  | |||||||||| ||||  |||||||| ||| |||||    
T  25382494 atatataaatataaattaaagttgtaataaacatcaagtacgaagttgaaatgataaggagtttgacaaaaatgttagggtgaatacttaaa 25382585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 33180178 - 33180246
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 227  Q
    ||||||||||||||||||| || ||| ||||||||||| |||| ||||||||| ||||| || ||||||    
T  33180178 aaattaaagttgtaataagcatcaagcacgaagttgaagtgacagagtttgacgaaaaagtttgggtgg 33180246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 6599753 - 6599823
Alignment:
Q  113 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt 185  Q
    |||| |||| ||||||||| |||||||||||||||||  |||| ||||||||||||| ||||||  |||||||    
T  6599753 aaaactcggatgaaccactaaaattaattataatata--taaatataaattaaagttataataaacattaagt 6599823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 6675206 - 6675276
Alignment:
Q  113 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt 185  Q
    |||| |||| ||||||||| |||||||||||||||||  |||| ||||||||||||| ||||||  |||||||    
T  6675206 aaaactcggatgaaccactaaaattaattataatata--taaatataaattaaagttataataaacattaagt 6675276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 33454 - 33512
Alignment:
Q  159 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaa 217  Q
    ||||||||||||||||||| |||||| || |||||||| || |||||||||||||||||    
T  33454 aaattaaagttgtaataagcattaagcacaaagttgaagtgtcggagtttgactaaaaa 33512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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