View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_114 (Length: 296)

Name: NF1358_low_114

Description: NF1358

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1358_low_114

[»] chr7 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 155; E-Value: 3e-82

Query Start/End: Original strand, 53 - 239

Target Start/End: Original strand, 5906753 - 5906939

Alignment:

Q	53	tgaaatgaaagggttttcatgaaattcaaaatgttagaggtgttaaaaagatacataggtgttaaaataagtggttaatatttattccctcttgatttat	152	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5906753	tgaaatgaaagggttttcatgaaattcaaaatgctagaggtgttaaaaagatacataggtgttaaaatgagtggttaatatttactccctcttgatttat	5906852	T

Q	153	aacgtgttggactcatcctcgatttgggttcaaacacatctaaaaccgattgtgttggtggtcctagctcatttctttgatgtttca	239	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5906853	aacgtgttggcctcatcctcaatttgggttcaaacgcatctgaaaccggttgtgttggtggtcctagctcatttctttgatgtttca	5906939	T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 148 - 236

Target Start/End: Original strand, 38001853 - 38001942

Alignment:

Q	148	tttataacgtgttggactcatcc-tcgatttgggttcaaacacatctaaaaccgattgtgttggtggtcctagctcatttctttgatgtt	236	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	38001853	tttataacatgttggactcatccctcgatatgggttcaatcgcgtctaaagccggttgtattgatggtcctagctcgtttctctgatgtt	38001942	T

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